2035918000: Acromyrmex echinatior fungus garden microbial communities from Panama

Overview

Basic Information

• IMG/M Taxon OID: 2035918000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045514 | Gp0051601 | Ga0010960
• Sample Name: Acromyrmex echinatior fungus garden microbial communities from Panama
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61239920
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Acromyrmex Echinatior Fungus Garden Microbial Communities From Gamboa, Panama
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Acromyrmex Echinatior Fungus Garden → Acromyrmex Echinatior Fungus Garden Microbial Communities From Gamboa, Panama

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: Gamboa, Panama
• Coordinates
  • Lat. (^o): 9.1167
  • Long. (^o): -79.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023692	Metagenome / Metatranscriptome	209	Y
F028352	Metagenome	192	Y
F054708	Metagenome / Metatranscriptome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
AECF_F56XM5W02F7IKM	All Organisms → cellular organisms → Bacteria → Acidobacteria	520
AECF_F56XM5W02GC1Y1	All Organisms → cellular organisms → Bacteria	510
AECF_F56XM5W02GSS22	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
AECF_F56XM5W02F7IKM	AECFG_1205640	F054708	IKLPYTKKGGKFSFDLHHRIAMTEDFGLPAEVTTVVEVLSGGTTSLGVFTIADKINPGDKFDEPIVKASSAEIDRFITPMYRKTITMDIRPGPQSISIVGQMLIITRGAITTRVDTPGTRIAVVSNFKFAETSLGVPLTR
AECF_F56XM5W02GC1Y1	AECFG_1442430	F028352	TASLFKFRAVTFRPSPLAESLIDTAHWLVVPNQHVPLRVFRFGLALVVVAFHITLTPLAYATPPDPTWQLSLFDDDDFDDIVGYITSAAALAEAPVERCLRFAPVLVVLRCSSAEDPAPFVPLSSADPRAPPAPLSV
AECF_F56XM5W02GSS22	AECFG_195090	F023692	MRILFGIAIAAVVAFTAWSVEPTIGKTPSTVSLDPHGMMATTTNLPQAHYDDFSTIY