2029527004: Atta cephalotes fungus garden (ACEF)

Overview

Basic Information

• IMG/M Taxon OID: 2029527004
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045516 | Gp0051574 | Ga0011058
• Sample Name: Atta cephalotes fungus garden (ACEF)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40623338
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Atta Cephalotes Fungus Garden Microbial Communities From Gamboa, Panama
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Atta Cephalotes Fungus Garden → Atta Cephalotes Fungus Garden Microbial Communities From Gamboa, Panama

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: Gamboa, Panama
• Coordinates
  • Lat. (^o): 9.1167
  • Long. (^o): -79.7
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010740	Metagenome	300	Y
F036993	Metagenome	169	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACEF_contig14626	Not Available	506
ACEF_F3GTV4A02F8DYE	Not Available	512
ACEF_F3GTV4A02GG3OP	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACEF_contig14626	ACEFG_315210	F036993	YPIKMYQGGTPHEPFFIAIDCRSQVIIGPNKKIVATHVVGELEVLV
ACEF_F3GTV4A02F8DYE	ACEFG_630550	F010740	MAFMDRKRNTDTAKNGYQIPMYQGGPPHEPYFIAIDNQDQIIIGPSKKIMAMHVVG
ACEF_F3GTV4A02GG3OP	ACEFG_569150	F036993	MLQEGPSYELFFIAINNRGQVIIGPNKKTVTVYVVEELKVLV