2022920020: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats

Overview

Basic Information

• IMG/M Taxon OID: 2022920020
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051402 | Ga0026271
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34156953
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.96507
  • Long. (^o): -110.71215
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015737	Metagenome / Metatranscriptome	252	N
F056643	Metagenome / Metatranscriptome	137	N
F060939	Metagenome / Metatranscriptome	132	N
F061617	Metagenome / Metatranscriptome	131	N
F073600	Metagenome / Metatranscriptome	120	N
F101227	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite20_CeleraDRAF_122913	Not Available	692
YNPsite20_CeleraDRAF_deg1119010794216	Not Available	571
YNPsite20_CeleraDRAF_scf1119010802839	All Organisms → cellular organisms → Bacteria	14839
YNPsite20_CeleraDRAF_scf1119010803427	All Organisms → Viruses → Predicted Viral	1988
YNPsite20_CeleraDRAF_scf1119010803630	Not Available	5841
YNPsite20_CeleraDRAF_scf1119010804176	Not Available	10042

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite20_CeleraDRAF_122913	YNPsite20_CeleraDRAFT_519720	F056643	TPTRATRAVWEIDDLLLVRDVGMGRGVSDTATALVNYIEDYVAQLRFAWLARGDVQLLNVSGIIDVVKYGERAYEGATVTTRFAHLVRAPSA
YNPsite20_CeleraDRAF_deg1119010794216	YNPsite20_CeleraDRAFT_439250	F101227	MTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFY
YNPsite20_CeleraDRAF_scf1119010802839	YNPsite20_CeleraDRAFT_187640	F073600	XFSDTKNRYIDFDKDEPVRIEGQIDLINLATSKLPNYLPDNPDTLFQSDFAVHLQDDAKMTKLNLKNPTSSQID
YNPsite20_CeleraDRAF_scf1119010803427	YNPsite20_CeleraDRAFT_297250	F060939	MLWRLRVWFQDASGTTSYTGAWLRSPNETAIFAFVDALRGLSNAQITHVDISRRFPYTSQVPSGRDRGVAMFVQPAYNPDAPGVVSDAFPMWVPESELYAVRDLWGYPITVRGFVSRAGYNMDEVVPEDGEPQSLDNEYPDSTDDYYLVAIRRNFWHRLLRDARAYNTLSMTLPDEKARRVRLDIRDLFLG
YNPsite20_CeleraDRAF_scf1119010803630	YNPsite20_CeleraDRAFT_535120	F061617	MAKTLNALANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLIICGLLWYLNVFDLQTIVGQPVSHQSEQLTALDLIRQLNWNTTSQANTTDKQTANWQSPNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNSTEANKLAQAANLIQVQNLDGLDTYAIIYFNQPSKTSFDLKKYLKGDPLESTCRXXXXXX
YNPsite20_CeleraDRAF_scf1119010804176	YNPsite20_CeleraDRAFT_590450	F015737	MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWSNLVSATIPTEKTKLNPKTAFQHTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPKTTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNERIETYLHKHLTSNVLITTIEFTKFAQDAFFDNLVRKTLVVRLT