2022920019: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1

Overview

Basic Information

• IMG/M Taxon OID: 2022920019
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051405 | Ga0026239
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29273225
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	4
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7649458
  • Long. (^o): -110.4303679
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y
F013155	Metagenome / Metatranscriptome	274	Y
F017763	Metagenome	239	N
F019254	Metagenome	231	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite18_CeleraDRAF_35089	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	767
YNPsite18_CeleraDRAF_43430	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	682
YNPsite18_CeleraDRAF_68134	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	649
YNPsite18_CeleraDRAF_deg1118685631735	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	969
YNPsite18_CeleraDRAF_deg1118685633821	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	776
YNPsite18_CeleraDRAF_scf1118685640887	All Organisms → cellular organisms → Bacteria	3856

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite18_CeleraDRAF_35089	YNPsite18_CeleraDRAFT_366020	F000750	MYLSVAITAFLFSYWFFKKKFRAKPFKLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATF
YNPsite18_CeleraDRAF_43430	YNPsite18_CeleraDRAFT_83650	F013155	MELYQAVVIAIALVNLAVTAWLLRLLLPVWQTLRKVVFALDNYDFDKLAKQFLSNEKPLAESVVVKTMEKKEEGYREISIIKTYKKPLDAKEIQRT
YNPsite18_CeleraDRAF_68134	YNPsite18_CeleraDRAFT_329570	F000750	MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATF
YNPsite18_CeleraDRAF_deg1118685631735	YNPsite18_CeleraDRAFT_410830	F017763	LHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIIAGGIPL
YNPsite18_CeleraDRAF_deg1118685633821	YNPsite18_CeleraDRAFT_114440	F000750	MYLSVVITAFLFSYWFFRKRFRVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNPsite18_CeleraDRAF_scf1118685640887	YNPsite18_CeleraDRAFT_379540	F019254	LAITGNKDLSHLRDDWPLRVLLSALAEGVAELAALLGRAEAQKLPPEFRTRIRAIEEEMHELSRLCQNPPLPPTHDKRRNVDDLPLF