2022920018: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer

Overview

Basic Information

• IMG/M Taxon OID: 2022920018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051404 | Ga0026237
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31835426
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.533365
  • Long. (^o): -110.849887
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F003460	Metagenome / Metatranscriptome	485	Y
F030445	Metagenome / Metatranscriptome	185	N
F032293	Metagenome / Metatranscriptome	180	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite16_CeleraDRAF_100998	Not Available	742
YNPsite16_CeleraDRAF_scf1119010769745	All Organisms → cellular organisms → Bacteria	1354
YNPsite16_CeleraDRAF_scf1119010770530	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1341
YNPsite16_CeleraDRAF_scf1119010775673	All Organisms → cellular organisms → Bacteria	1222

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite16_CeleraDRAF_100998	YNPsite16_CeleraDRAFT_451450	F030445	MLVAIARPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVVTQIGDELIVYCDQLSRTVWRGQIERIEEARDGSIVWHALGFGALQRDARISVVQNMYDMSRWTPVGSGFMSSSGYDSRGDLWEYEVVSTA
YNPsite16_CeleraDRAF_scf1119010769745	YNPsite16_CeleraDRAFT_183830	F032293	MRVRQIGTLVFDADTNIVVDASNQDAPGVGFRADSLFNPQPFAAEIAFRRNTRQQALDAVNTLARELHSYAQRRQAGRFAVAGGATVLVEDATGGATLRAFLRDGSITLLGVEATATGVIARV
YNPsite16_CeleraDRAF_scf1119010770530	YNPsite16_CeleraDRAFT_501730	F003460	MHDLQHAYEVLHEIIAPRGLYAESTLLLVVNLRRPSELRDVAVELVIRARAGGSPVWRANESLRVPGRMKLRSLAGALFGLFMRAAYDVEAQISLPGDDRPRSQGRARA
YNPsite16_CeleraDRAF_scf1119010775673	YNPsite16_CeleraDRAFT_103570	F001564	PEKPSLRFLIHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKMGVRIGLDEIRADEYRAMLIVEEERERLDRERFEDRRP