2022920007: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring

Overview

Basic Information

• IMG/M Taxon OID: 2022920007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051332 | Ga0026350
• Sample Name: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12043598
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	3
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733473
  • Long. (^o): -110.70007
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F021808	Metagenome / Metatranscriptome	217	Y
F058700	Metagenome / Metatranscriptome	134	N
F059131	Metagenome	134	N
F063429	Metagenome / Metatranscriptome	129	N
F077497	Metagenome / Metatranscriptome	117	Y
F080245	Metagenome	115	N
F090627	Metagenome / Metatranscriptome	108	N
F099549	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite14_CeleraDRAF_29708	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	709
YNPsite14_CeleraDRAF_34229	Not Available	731
YNPsite14_CeleraDRAF_43670	Not Available	735
YNPsite14_CeleraDRAF_47405	Not Available	631
YNPsite14_CeleraDRAF_48614	Not Available	735
YNPsite14_CeleraDRAF_deg1118686613183	Not Available	972
YNPsite14_CeleraDRAF_scf1118686615366	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1085
YNPsite14_CeleraDRAF_scf1118686615696	Not Available	2126
YNPsite14_CeleraDRAF_scf1118686615782	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	3605

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite14_CeleraDRAF_29708	YNPsite14_CeleraDRAFT_168390	F077497	STLEDPQGKMDKEQISKIEEIIEKHLFEETNNSAYELNKIYAITQYLIYQQLKEINKKLDSIDENLYELANPGIWKK
YNPsite14_CeleraDRAF_34229	YNPsite14_CeleraDRAFT_07220	F058700	DFPPWADAYEQIQMLEDIEGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTSEQKNEVLGSVIHEMALYGIEWLFNDIAYDLINNEKYNKDAGKVVEAAKDYLNKRISYDDLMDRIADVFWPTEEDKKSTAYEDFLRGTGLADYIDKDELNEIIKEYLVEKVGYRLPLLSKDVKQK
YNPsite14_CeleraDRAF_43670	YNPsite14_CeleraDRAFT_63810	F099549	MDETTQYVYQVPDLKVIFLMDFGNVIRQIVDLLTYSDISADTKTFDREELRNKLRAAISYALALLASTWGYSMSEQDQEGVKMAKAKLTALFNRVVSNSQLTYLELLDIYFTLIQQVSIIFNYKTPVPRPRPGNYEIT
YNPsite14_CeleraDRAF_47405	YNPsite14_CeleraDRAFT_48320	F006070	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAE
YNPsite14_CeleraDRAF_47405	YNPsite14_CeleraDRAFT_48330	F059131	PRLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSSTLPVATSGVPPKFVAEEVVSARLPVKVT
YNPsite14_CeleraDRAF_48614	YNPsite14_CeleraDRAFT_115230	F063429	GPEVMGMSGEIENIAQRIEQAFTDSYEQDVKNGIVPWADASRIIEYMEYMAQEGLDSENLIEYLAKRSGIGLDVFKQMWAKLTDEQKEDLLNEIAHNIAFDGFTRLIKAIVDDLNRQKKYRKDRGKVLKYALYYICDDDSVDYDGLEGVIISVFWPENKKKKDEEAYEDFIRGLELAKYLDEETVKEAITTYLVFGIAESC
YNPsite14_CeleraDRAF_deg1118686613183	YNPsite14_CeleraDRAFT_122990	F090627	MHLPGRLAIGINGHVRVMLNGKVIYDDTNAITTQFLQYLQNMLQGTVPTVNSIYVIAKPIGTPIALNSLNIQNGYQQVNMTFANQNVPQPVQALELWISTNVGNYPVAVLQLQNPITQSGQIVVQWTITIQLPSIIQGAQVFAISDSIPQIIMQLFIPQQYFSNPIQLTNTQPTLQIYSTPQVTPTVIVPSNAGAGAVAYINTSSTISTFSALLYLLGQYIMTVAQGNLNEQAVNSLIIASAFITFTSSNITSVVP
YNPsite14_CeleraDRAF_scf1118686615366	YNPsite14_CeleraDRAFT_101490	F021808	MTEEPPYGTIAWYFFEIDERQRQIYELVFDIDQKIAKVKDLLNEIDILKAQLETNVNVGK
YNPsite14_CeleraDRAF_scf1118686615696	YNPsite14_CeleraDRAFT_21240	F080245	VIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
YNPsite14_CeleraDRAF_scf1118686615782	YNPsite14_CeleraDRAFT_51410	F099549	MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSTDTRTFDNEELKNKLRAAISYALGLLASTSGYSMSEKIQRDVLTAKNTLIALFDAIMTKPQLTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT