2022920005: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring

Overview

Basic Information

• IMG/M Taxon OID: 2022920005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051324 | Ga0026379
• Sample Name: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17390485
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733519
  • Long. (^o): -110.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008606	Metagenome / Metatranscriptome	330	Y
F032562	Metagenome	179	N
F061983	Metagenome / Metatranscriptome	131	Y
F080679	Metagenome	115	Y
F087444	Metagenome / Metatranscriptome	110	Y
F096263	Metagenome / Metatranscriptome	105	N
F099548	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite08_CeleraDRAF_42235	Not Available	581
YNPsite08_CeleraDRAF_48626	Not Available	781
YNPsite08_CeleraDRAF_72579	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	676
YNPsite08_CeleraDRAF_82297	Not Available	742
YNPsite08_CeleraDRAF_83524	Not Available	764
YNPsite08_CeleraDRAF_scf1118686595237	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales	12173
YNPsite08_CeleraDRAF_scf1118686595681	Not Available	3509

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite08_CeleraDRAF_42235	YNPsite08_CeleraDRAFT_07380	F080679	LSRKSLRIIKYLYTNGYATLRILEKSLKMNGVTVKAYIDLLHKYGIVKVSRVGRAYVIMLNQEGKYTKAILSFLREVGYL
YNPsite08_CeleraDRAF_48626	YNPsite08_CeleraDRAFT_15320	F008606	VAEARDPEGDPESRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQELAEIKGAVTDIRRNSVAILASVLTVLVAVVIGLIVH
YNPsite08_CeleraDRAF_72579	YNPsite08_CeleraDRAFT_163730	F099548	ILIKGAPGDCVSITPSLLGNMIGDGAVREALRLLRVLYIQGILDRVNGAYTLCLEDNPQLWAIVKRLPIDEAVAWLLWLIEDALDGKPINTGPSFEL
YNPsite08_CeleraDRAF_82297	YNPsite08_CeleraDRAFT_162090	F061983	LKKYVFKVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYSDVIDVKKLKDVGAIVVKEQDIQPVRTMKTLVA
YNPsite08_CeleraDRAF_83524	YNPsite08_CeleraDRAFT_11980	F087444	IDPIFSYPTEGGNVFVYLAKAGFATYIFVTFDDGYSEYAYAIETLVARPALVTKPFVNVAKTIWNLLEQAEKEFYNPFISNPFTQLLHDNEARTELIVCVQKLLEESGE
YNPsite08_CeleraDRAF_scf1118686595237	YNPsite08_CeleraDRAFT_153430	F096263	MELSCELMELTVELTELRVPDMLDSVPLMELRSELTVLRSLLMVPRLLDTPDSVELMELTVELTELNVELTELSCELSEPSVLFMLVR
YNPsite08_CeleraDRAF_scf1118686595681	YNPsite08_CeleraDRAFT_124580	F032562	VSEEKGSKVSLLSEDRLSVKTFADTNHNTTRYFAEIEINGKRIASEKHESLDVFKDFERIIENLYRKAEILKELNSPRAADALAEDMINDIAELVLLTRALLDKIESWRLWKSQEPNL