2022920004: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP6 White Creek Site 3

Overview

Basic Information

• IMG/M Taxon OID: 2022920004
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051323 | Ga0026298
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP6 White Creek Site 3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29209878
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733519
  • Long. (^o): -110.404033
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037503	Metagenome / Metatranscriptome	168	Y
F080677	Metagenome / Metatranscriptome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
YNPsite06_CeleraDRAF_39641	All Organisms → cellular organisms → Bacteria	640
YNPsite06_CeleraDRAF_deg1119010597231	Not Available	739
YNPsite06_CeleraDRAF_deg1119010597960	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	772

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite06_CeleraDRAF_39641	YNPsite06_CeleraDRAFT_424570	F037503	IIMIEVELPIGLGGFTAYQILMNSECYHIGQGVRAWVLRSVSERERTQTNR
YNPsite06_CeleraDRAF_deg1119010597231	YNPsite06_CeleraDRAFT_84620	F080677	IFLMKKEFLQELLENVAWWSLGWFALLSGLLNLTQGFWGWLSAICFLLASMVTLPIFWSWLTSKIIVLQSPKLVRKITIGAMFLLLLAVMLTPVSVDQQTTFASEVRSDSTTELPIVKQPTETVPLIIKLISSLGG
YNPsite06_CeleraDRAF_deg1119010597960	YNPsite06_CeleraDRAFT_343970	F037503	MFLGTASGFYMIEVELLIGLGGVKAYQTLTNSECYNILLAVRPWALRSMGREGNNPEYQL