2020627001: Viral communities in wastewater treatment process (AS)

Overview

Basic Information

• IMG/M Taxon OID: 2020627001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045482 | Gp0051392 | Ga0011033
• Sample Name: Viral communities in wastewater treatment process (AS)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23476721
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Viral Communities From Wastewater Treatment Facility In Singapore
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore: Singapore
• Coordinates
  • Lat. (^o): 1.332
  • Long. (^o): 103.756
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043390	Metagenome / Metatranscriptome	156	N
F082381	Metagenome	113	Y
F083890	Metagenome / Metatranscriptome	112	Y
F098918	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
VrWwAS_contig00143	Not Available	543
VrWwAS_contig05753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	568
VrWwAS_contig19489	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	506
VrWwAS_contig45636	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
VrWwAS_contig00143	AS_223410	F083890	MSHETFAPKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARRRASAEQKA
VrWwAS_contig05753	AS_395890	F043390	VAEMIMGYMVKNEDSQKVITLTLTAEQLEVIDGALEMYCMGLAEQNDPHLKYATNAHEAIYNVLESNFGVEA
VrWwAS_contig19489	AS_761320	F098918	MNATIIFQTALMDKMYDNQDYDGMSMDDRMKMAESCGLALRKLIHTYTGLDTHKIEEFL
VrWwAS_contig45636	AS_214010	F082381	MGKENIKLKRGGKRPFSGRKKADYQTKTIAFRVRVQWVEAIKSMVKDKIADLSQNSS