2020627000: Viral communities in wastewater treatment process (EF)

Overview

Basic Information

• IMG/M Taxon OID: 2020627000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045482 | Gp0051391 | Ga0011176
• Sample Name: Viral communities in wastewater treatment process (EF)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30035399
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magneticum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Viral Communities From Wastewater Treatment Facility In Singapore
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore: Singapore
• Coordinates
  • Lat. (^o): 1.332
  • Long. (^o): 103.756
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F002371	Metagenome / Metatranscriptome	566	Y
F010914	Metagenome / Metatranscriptome	297	Y
F023098	Metagenome / Metatranscriptome	211	Y
F029893	Metagenome / Metatranscriptome	187	Y
F033445	Metagenome / Metatranscriptome	177	N
F049316	Metagenome / Metatranscriptome	147	N
F060712	Metagenome / Metatranscriptome	132	Y
F078624	Metagenome / Metatranscriptome	116	N
F078696	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
VrWwEF_contig01699	Not Available	638
VrWwEF_contig01879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magneticum	2662
VrWwEF_contig06887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	763
VrWwEF_contig13989	Not Available	516
VrWwEF_contig18490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1320
VrWwEF_contig33657	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	500
VrWwEF_contig44186	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012	786
VrWwEF_contig47465	Not Available	500
VrWwEF_contig51883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023
VrWwEF_contig53653	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	772

Sequences

Scaffold ID	Protein ID	Family	Sequence
VrWwEF_contig01699	EF_385090	F000388	MKVIKVTKEYFQTEDEKVYFFEPLEKEVSIEDMQKIVDANEKLVKELKDYAIHGK
VrWwEF_contig01879	EF_735380	F095393	MKQSKKQIAECEQELKNRCIECSNFNKKKGECLKHGFVPVEFIYQKNDCLDYDWLPF
VrWwEF_contig06887	EF_751030	F060712	MTTPTDIANRALQVIGTRTTVTDAELANNSTNEAIQINLVYDVIRRRLIRMAPWNCVLKTANLVYITSLPGTLENSSQVSVGQTWAPGLPSPPWSYEYQYPVDCVYAAWIPP
VrWwEF_contig13989	EF_949320	F033445	MGKTLLNPRRIALNLLLVSIIWATPLQANDICFTEPDASKIVVELEKGRICEQEVIQYESSVKELSMQIESLKTQVETMSKKFDETMKQLETERKIASEKDKAR
VrWwEF_contig18490	EF_951720	F078696	LNIQPSDAWQLTPKLFWSLWDMHLDKMEQSTGKAYTRPMRKTEFEELNDFLDSIHGNN
VrWwEF_contig33657	EF_305720	F082354	IKSKVFRLKEAKEVTKGASLPKGQEIEIVMDVVYVNGNMVPPSMQPLFYEFVTKNPSFFEDDTRSW
VrWwEF_contig44186	EF_361660	F023098	NKDGACGMDERRQNWTCEAHHELVASLRDINNKLDGMIERQIAYAETSARIEEKQESIERIVTNGLSHNVANISKRLDIFCDEVKKRLDELEEFQWFRLPITRLRDSIFWYLFKIAAAGGCFI
VrWwEF_contig47465	EF_903470	F049316	KRITTIVLDREADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEFLDKLYWQYKIDNPHIFTAIQFGNLADAAMMIAEAVKKLPQEPEAQKLIDEGMRLISILSK
VrWwEF_contig51883	EF_745280	F010914	MIYKILIEQNGKFVDLGETIECEFEQTQEIIDALQLEHGCCCALEAVSE
VrWwEF_contig53653	EF_298520	F078624	MKLCIHVRPRDDGQGWAIDVYDGRRAWTKTHLGESPLNKAEAHRLAHKLRDPKFYTARTKRVVNSGGVR
VrWwEF_contig54003	EF_06120	F002371	MKLQPKNKQETRGGTRQGSGAKPKYKEETKTVAFRCPLSKVDELKIVVKSKLSEWSVK
VrWwEF_contig54305	EF_593540	F082719	MRTQDYITLVRQNNKAIWDGINNLVALQREWNALDYGNTLGDGEGENGGVTAAEVGAVTFDTANAFVTVLGSGHATNMAKLL
VrWwEF_contig56203	EF_395120	F029893	MPVMQDSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFWRIDVN