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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2020350001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045482 | Gp0051417 | Ga0011175 |
| Sample Name | Viral communities in wastewater treatment process (AD) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 29292896 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 38 |
| Associated Families | 35 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 20 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin145 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin095 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | 1 |
| All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Unclassified → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore: Singapore | |||||||
| Coordinates | Lat. (o) | 1.332 | Long. (o) | 103.756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024321 | Metagenome / Metatranscriptome | 206 | N |
| F024777 | Metagenome / Metatranscriptome | 204 | Y |
| F029768 | Metagenome / Metatranscriptome | 187 | N |
| F030944 | Metagenome / Metatranscriptome | 184 | Y |
| F033394 | Metagenome / Metatranscriptome | 177 | N |
| F039402 | Metagenome / Metatranscriptome | 164 | Y |
| F041512 | Metagenome / Metatranscriptome | 160 | N |
| F047561 | Metagenome | 149 | Y |
| F051061 | Metagenome / Metatranscriptome | 144 | N |
| F057876 | Metagenome / Metatranscriptome | 135 | Y |
| F058559 | Metagenome / Metatranscriptome | 135 | Y |
| F058971 | Metagenome / Metatranscriptome | 134 | N |
| F059692 | Metagenome / Metatranscriptome | 133 | N |
| F060834 | Metagenome | 132 | Y |
| F062245 | Metagenome / Metatranscriptome | 131 | Y |
| F065806 | Metagenome / Metatranscriptome | 127 | N |
| F066564 | Metagenome / Metatranscriptome | 126 | Y |
| F068794 | Metagenome / Metatranscriptome | 124 | N |
| F071210 | Metagenome / Metatranscriptome | 122 | N |
| F071725 | Metagenome | 122 | N |
| F071978 | Metagenome | 121 | Y |
| F072892 | Metagenome | 121 | N |
| F076577 | Metagenome | 118 | N |
| F077343 | Metagenome / Metatranscriptome | 117 | Y |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F085346 | Metagenome | 111 | Y |
| F085349 | Metagenome / Metatranscriptome | 111 | Y |
| F088844 | Metagenome / Metatranscriptome | 109 | N |
| F091585 | Metagenome | 107 | N |
| F093490 | Metagenome / Metatranscriptome | 106 | N |
| F095347 | Metagenome / Metatranscriptome | 105 | Y |
| F095526 | Metagenome / Metatranscriptome | 105 | N |
| F096294 | Metagenome | 105 | Y |
| F102171 | Metagenome / Metatranscriptome | 102 | N |
| F105255 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| VrWwTxAD_contig00412 | Not Available | 762 | Open in IMG/M |
| VrWwTxAD_contig00576 | Not Available | 658 | Open in IMG/M |
| VrWwTxAD_contig01274 | Not Available | 723 | Open in IMG/M |
| VrWwTxAD_contig03369 | Not Available | 1703 | Open in IMG/M |
| VrWwTxAD_contig04011 | Not Available | 1080 | Open in IMG/M |
| VrWwTxAD_contig05967 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 525 | Open in IMG/M |
| VrWwTxAD_contig07037 | Not Available | 1503 | Open in IMG/M |
| VrWwTxAD_contig08596 | Not Available | 531 | Open in IMG/M |
| VrWwTxAD_contig14468 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 929 | Open in IMG/M |
| VrWwTxAD_contig17750 | Not Available | 664 | Open in IMG/M |
| VrWwTxAD_contig17819 | Not Available | 536 | Open in IMG/M |
| VrWwTxAD_contig17986 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 697 | Open in IMG/M |
| VrWwTxAD_contig18548 | Not Available | 697 | Open in IMG/M |
| VrWwTxAD_contig18787 | Not Available | 695 | Open in IMG/M |
| VrWwTxAD_contig31775 | Not Available | 506 | Open in IMG/M |
| VrWwTxAD_contig35578 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin145 | 509 | Open in IMG/M |
| VrWwTxAD_contig40022 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 530 | Open in IMG/M |
| VrWwTxAD_contig48065 | Not Available | 633 | Open in IMG/M |
| VrWwTxAD_contig52757 | All Organisms → cellular organisms → Bacteria | 1171 | Open in IMG/M |
| VrWwTxAD_contig53323 | Not Available | 770 | Open in IMG/M |
| VrWwTxAD_contig53608 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 6571 | Open in IMG/M |
| VrWwTxAD_contig53777 | Not Available | 1415 | Open in IMG/M |
| VrWwTxAD_contig54450 | Not Available | 1297 | Open in IMG/M |
| VrWwTxAD_contig54526 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin095 | 4358 | Open in IMG/M |
| VrWwTxAD_contig58733 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | 1427 | Open in IMG/M |
| VrWwTxAD_contig58919 | Not Available | 658 | Open in IMG/M |
| VrWwTxAD_contig59140 | All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276 | 5795 | Open in IMG/M |
| VrWwTxAD_contig59364 | Not Available | 660 | Open in IMG/M |
| VrWwTxAD_contig59888 | Not Available | 733 | Open in IMG/M |
| VrWwTxAD_contig60009 | All Organisms → cellular organisms → Bacteria | 15991 | Open in IMG/M |
| VrWwTxAD_contig60497 | Not Available | 641 | Open in IMG/M |
| VrWwTxAD_contig60833 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001 | 1561 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| VrWwTxAD_contig00412 | AD_776880 | F060834 | TSTKTANSKELFKHSFDLMQLLKQKVITVEEAKAQANLLKQANNILRYELDRAIAEKKFENLDIRQIEDNE |
| VrWwTxAD_contig00576 | AD_142180 | F030944 | MDKMKNTSTTLELPEGSKATIQGKVIDGKHYLVVEVENEEQELKEGDFAIFWDYNTEDAIIAVYKRYDDDDGLYVDHNDLYWANAIKWDGTKEQFEKVLRG |
| VrWwTxAD_contig01274 | AD_517010 | F068794 | MAKKEKGLVFNHKTITIRGSFINMLFTMVLMILFIAAAFNDKIAANLKLIAELIIAIYAISYGVWRGAKF |
| VrWwTxAD_contig01462 | AD_871710 | F029768 | MLDSVLREQEKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQAVEYLEFLEQAKVMSNHSLRFMERATEKMNSILQETESKIEQAIKEIEQEQEK |
| VrWwTxAD_contig03369 | AD_697270 | F105255 | MESNNDRVFTKLVDKHYSPLVIRKYTHWGFPIYVGLITDNDLTDLDHFVVEFMNVNATEGWKNNIQLLRNFAGKFTEELNKFYDRTEGVAVVFYVDKCFISSLYGDFMNHTSCRI |
| VrWwTxAD_contig04011 | AD_19190 | F057876 | MERMGRTGTRTIRVNKKMIDKIKENKKNHVEEYAKAVIAYKEEALRQLVELTNKVNEGALKIELKLITPVDNSSNYDKIIEMFEWEVDEVVELEQNEFIEYVQDETEFAVNA |
| VrWwTxAD_contig05967 | AD_881240 | F071978 | MYNKDKIIKTLREIEAESKTIKPYVVVLQPRRDLKEIPAQKLSGYDTVHVDLCGYSRGFAEIGGEKVDVARNYLIEQALESGAKYALFVGEDTVLPYDGFMKLHETAEKNLDAMVVGVYYIKMSI |
| VrWwTxAD_contig07037 | AD_68230 | F088844 | MRSMTKFDDYFTKKGRNVSRETIGQNSEFIIYRVIGENWKIEIASKFFNDFNKNVDFREAFLLCNVVIVRLREKNLCPYCVEYFENLTQIYQHLKSWHC |
| VrWwTxAD_contig08596 | AD_180090 | F095526 | MEIKIGSNSLIRDIDYDSKLCLTLGASGITIPLVALPSFEVDIFVENRETEKVHCTFDGATKTNCTITSAGEITCYMPAYTFSVGGKLFIEVITHTPDTNFADGSYDESITIDTK |
| VrWwTxAD_contig14468 | AD_883320 | F058971 | MTPNLIINLDIEPITLMWNGQAVSIPGTYELVPDEMVKHLHKRVMAIALHERKRIPFCGRLVGQARNGNGKGSVWLIEDDRGQLIKSQKPM |
| VrWwTxAD_contig17750 | AD_472390 | F024321 | MLEEILMIIAGMAGLGAFVSMLVNLLKAIGLIKDGQGDKAFKIADLIVFVAVTVVYLLKVQVDWAQVNEWLVLLTALFGYVVSVFSGEFTHETIKGTPVIGYSYSENKPKD |
| VrWwTxAD_contig17819 | AD_603280 | F078767 | MTNQITGITDEILTALQKAGCRTVGILPEVLMFSGNNNPFGFHLLNSETTENDNGGILTQLLDISIFIITQNGINKMKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINLTSNI |
| VrWwTxAD_contig17986 | AD_917430 | F058971 | MTPNLIINLDIEPITLMWNGQAVSIPGTYELVPDSEVRHLHKRVMAIALHERRRIPFCGKLVGQAKSGKGSVWLVEDDRGQLIKSQKPMVVEGV |
| VrWwTxAD_contig18548 | AD_90650 | F091585 | MENYFNIVQNTVFVSFVGLFAPFLFPYLFKIVGKWSKRELTKQEKRLLVGLVSFLVSIVIVAIGFNWQGELVERIMAFLMYIVLNFATLRGVVQSIYELVIKNIPSLDEEFDKIEKETKLLF |
| VrWwTxAD_contig18787 | AD_542210 | F039402 | MSLTDYSNLEKEIENVPEPKVLPRGTEVKARIINVRDGISDKNNAQWYQPVFDVPNEPLAMEFNDFFWDLSDRDKLDEKSGIRAMRKFKMFAEAFGIDYSKPFSWTDDLVGKEGWVILGIRKSEE |
| VrWwTxAD_contig31775 | AD_519680 | F093490 | RSDKDMKTLLSIALIFIATTVFATPFLVSDPQSGVTSYQLTGWSETNVTAQADGSLRMDVGSAVQGTTYNLTIAACNIWGCSTTVPFAFGKQLPAVPSQLRLVP |
| VrWwTxAD_contig35578 | AD_147230 | F047561 | MAESNIQPNQIIPDFGTLKNGKLDILVNWDITSDTKTGDMGNEYTSWSYESARINWVLPAVYESEADIQSYLDANYSTGENILGWAQASKITRLTGYKWDLTYPDLIQ |
| VrWwTxAD_contig40022 | AD_40390 | F085349 | MFKILSIREQLMEEKRKNEALRALNIDLENALLELAEIVAMNEATLQEVTNG |
| VrWwTxAD_contig48065 | AD_123470 | F066564 | METILNLESKEKLDDCNNIKNLLQKHLTAADSVTVKQVNNVSADNGITYIVKVISDCDSKVLLSQVYSISKVLDQDCIAYSSSDSAIGQGFIGIRPYDKFDDGLFIDYDSLKPLAALK |
| VrWwTxAD_contig52757 | AD_485910 | F095347 | MYIEAAKAKVEICLEPSKGMELYGYAKKLLSNLIVHLVSNY |
| VrWwTxAD_contig53323 | AD_612240 | F033394 | MKSIYIYFVDEKADIYYKDNSKNLHCTINLYTTNNEIREQFRKNLLEKYWDKVEISDINVLKKHSFKDSFIRIFTQYRENFINND |
| VrWwTxAD_contig53608 | AD_204940 | F058971 | MTPNLIINLDIEPITLMWNGQAISLPGTYELVPDEMVKHLHRRVMAIALHERKRIPFCGRLVGQAKSGKGSVWLIEDDRGQLIKSQKPMVIEGGKEG |
| VrWwTxAD_contig53777 | AD_524320 | F041512 | VEKDYRLIRDLNSYVKLRAKKDTAITLKLKAKIAKMSGEELDIAEVYYHQLLKSDIRTLGEIGCIELAIALAQWLYPRILREAYAERSKDYMLAP |
| VrWwTxAD_contig54450 | AD_850850 | F065806 | VGCSNIVAYGYAHDESTWSNAGKIYDWAGNGQKLVSIQESESSGAARNRVYFYGGYTQDNTADARSGKCLQFNPKNATYWIEQSFFVPATASTARTVAIYLKDDSSFNGSVWLELWFNGVRIAGPTEKTMTTSYVQESITGAADGYPG |
| VrWwTxAD_contig54526 | AD_48440 | F062245 | MSAYLETTIQRWNGADGDQMAITDAPEGSTFHAVDVGKKYIFHDGGWTEDLRDIYAIQAAAI |
| VrWwTxAD_contig57991 | AD_928730 | F102171 | IESNSDLKRFGVEWIKLDHNLCRAFATNEFAMIVADIEPNQWHDIFDGLPELVFITKLKRDEVHYFEGKELVYYNYRTVFEAVGKEPNYQPVMHLDLELLRNLTDKFNDVYFVKQSGLVLFMKLEGDKYPAGSYYGR |
| VrWwTxAD_contig58733 | AD_441090 | F077343 | PDHPYATLAEAIAASDAAIALAANRWWARRNRIYACGDDLGEDLVKFPTKCDVIGCGSQNSNTQLGLSGHHAPVGESFGTRFFNVHFKAKAHASPVITLTNETGGLQVHGCTFDGTLGTMTSGILATASPFLVVDDCDFVGTFATSYITFGAGEAGRTRILNNRMLGVAAKGIVAPAQTKAAWIPLIQGNTIIATGKPVEDAASVFAVVNNRLITDIDIGTTTDGYSFDLSMACGNILTGLNGVAATVPFAVIAEG |
| VrWwTxAD_contig58919 | AD_792540 | F058559 | KTLNEARNYACGDHGRDVLLTYGDYDETILSYHPMSERLERIQSVSEAKEKLLREYEKKRFIK |
| VrWwTxAD_contig59140 | AD_265230 | F076577 | VNLWPESKVLALMELAFHFGAINYELNNGKKRREMWKEFKENAIDKRLKYVNPDPRCTHPVNLDVIDYCWGYARKIDKGEEIGMEELCEGCEFFKKEANNENPTQSN |
| VrWwTxAD_contig59140 | AD_265240 | F071725 | MKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIREKWERKEINEVGLFHELEKLSKVESLPG |
| VrWwTxAD_contig59140 | AD_265330 | F059692 | MDKETEQLILKKLQLDYLSLHAVLTDLEKIISALVVDLDPRVNEIQRIQDQMKECLRGS |
| VrWwTxAD_contig59140 | AD_265350 | F072892 | MNINLLKTISTRLFGLYSQFKSIVSDLETNNTLDNREWAEGLLNHLSAELYYEANCLTDVLFPPKIEEKDEVMFKIDGIIDAGRNPMSEDEFCELFLKWAEENKLQFGGGLGVYREEEEGEPLAGE |
| VrWwTxAD_contig59140 | AD_265360 | F096294 | SSSAEPLETKHYRLITQEQYEAELKEAYFSGWEDRNDNELTEIFHKRSRTKEEYFKWFMEELRKA |
| VrWwTxAD_contig59364 | AD_689510 | F058559 | GRYFTTLKSARNYATGDHGRDVLLTYGDYDETILSYHPMSERLERIQTVNQAKEKLLREYEKKQFIK |
| VrWwTxAD_contig59888 | AD_734710 | F085346 | MNQITQMFMESNARMKKIMKGGFRLDEIASAQREFEGQIKLINAVVSAFGIASKNKRALDGLNKMNLMDDSTAIDLLLGDPEVDKVKCPEHDDLITRAECLDYSGSHSDECLG |
| VrWwTxAD_contig60009 | AD_17120 | F051061 | MGLLDKLEERAKNRERKSLYIEEIDETVYWYPMTAGERQRIMNAAGFKWARDAVQMDNAKYKASLIIEKLEDKDGKKIFSNTPEHKDLLINKIADELLTKIVNAIDPPRTEEQQIEEAKN |
| VrWwTxAD_contig60497 | AD_940200 | F024777 | MKGVKMDAELIFAEDVEVCPKCGSSEFWENRIIWTGDDPTDEELASIECKVCGAVFYARDYYRRRFGKLEDDDERNTILEKELEVGFWLG |
| VrWwTxAD_contig60833 | AD_630970 | F071210 | MGLGELNMKEKRWLGTQKYELHCFYCGGFHITGNCPQIVKEMNGWKYDRSCPETGHIKIVPNGDEYPTVLAFNGYHYRVVGLWGVPGKLLWLELQRFYGDTIVAATFCPDELMEMDLGMSDDEQLSAWLGGLPFLSVSPPEFNGSEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |