2019105003: Viral communities in wastewater treatment process (IF)

Overview

Basic Information

• IMG/M Taxon OID: 2019105003
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045482 | Gp0051374 | Ga0011172
• Sample Name: Viral communities in wastewater treatment process (IF)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24210189
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → Viruses → unclassified bacterial viruses → Methanosarcina virus MetMV	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Viral Communities From Wastewater Treatment Facility In Singapore
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Unclassified → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore: Singapore
• Coordinates
  • Lat. (^o): 1.332
  • Long. (^o): 103.756
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y
F021262	Metagenome / Metatranscriptome	219	N
F033445	Metagenome / Metatranscriptome	177	N
F037115	Metagenome / Metatranscriptome	168	N
F039036	Metagenome	164	Y
F043390	Metagenome / Metatranscriptome	156	N
F049316	Metagenome / Metatranscriptome	147	N
F060712	Metagenome / Metatranscriptome	132	Y
F062245	Metagenome / Metatranscriptome	131	Y
F071272	Metagenome / Metatranscriptome	122	N
F078253	Metagenome	116	Y
F078624	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
VirWwIF_contig02331	Not Available	1037
VirWwIF_contig02466	Not Available	538
VirWwIF_contig06628	Not Available	893
VirWwIF_contig07669	All Organisms → Viruses → unclassified bacterial viruses → Methanosarcina virus MetMV	762
VirWwIF_contig08585	Not Available	531
VirWwIF_contig09329	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	825
VirWwIF_contig09818	Not Available	501
VirWwIF_contig11299	Not Available	896
VirWwIF_contig18545	Not Available	506
VirWwIF_contig38220	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	635
VirWwIF_contig45814	Not Available	592
VirWwIF_contig51960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	3620
VirWwIF_contig52069	Not Available	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
VirWwIF_contig02331	IF_224220	F049316	TIVLDKEADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEFLDKLYWQYKIDNPHIFTAIQFGNLADAAVMIAEAVKKLPQDPEAQKLIDEGMRLISILSK
VirWwIF_contig02466	IF_486400	F078253	RIENPEDKDGMWYTKDGILRKKIHILCPDGIAKDFPMPFNPIHKKDGHIWQSAGKNVENMNQWFTASDAINLFNNGFKLFEFETTMFQELENEILFCRKGVVKQREIPLENIWDIASVIGRP
VirWwIF_contig06628	IF_201880	F062245	MTVCLETIIQRWNGQDGDQVTITDAREGSTFHAVDTGRKYVFHDGGWVEDLRDIYVVQHV
VirWwIF_contig07669	IF_509760	F037115	MRVKHGSDTYPEIIVKSAGKTQVRYDIEETEFEEMDGTKRACYDFSYVAIEGELTRAKIIDAIIADEIGNKDAELALINNELASPGTAEYAAYQALRTHAKEIATEV
VirWwIF_contig08585	IF_630080	F078624	MKLCIHVRPRDDGQGWAIDVYDGRRAWTKTHLGESPLNKAEAHRLAHKLRDPKFYTARTKRAVNSGGVR
VirWwIF_contig09329	IF_209900	F078624	MKLCIHVRPRDDKQGWAVDVFDGRRAWTKTHLGESPLSKAEAHRLAHKLRDPKFYTARTKRAVNSGGAR
VirWwIF_contig09818	IF_127940	F039036	VTTFQIIIRKIGVYYSKPIWSFIRNLVFWIGHLNKIGAVREDMKMLKKLTLEDFMKKFLWQEDVVGDWTPWVMTILCNDFTDDCDGAAELAKWWFKEHGVEADILNLYNSKEGHTVCVAEGIMVSNGNVIKMNTDRDSVLKYFNGEYDTV
VirWwIF_contig11299	IF_735700	F033445	ADAGKIVVELERGRFCEQEVVQYEVSVKELSIQIESLKTQVETMSKKFDETLKQLDTERKIADEKDKARLEEIKAAGKPQWTMLFGGFGAGALLIGALVLLL
VirWwIF_contig18545	IF_331660	F071272	ETAAKARVYKAAVDQLAESMAGGAWQDGPAPKDGSWILGLFHGLPYVVAYDSWEVGGETLPDWSGSPPDGYESGWCLAGDNLHVMDKDEPEKWARIIHPNRHMPASWDGPGNRS
VirWwIF_contig38220	IF_146640	F060712	MTTPTDIANRALQVIGTRTTVTDAELANNSTNEAIQINLAYDTVRKRLIRMAPWNCVLRTANLVYITSLPGTPENTSTSQVGQPWVPGLPLHRGLMNTNTRWIVSTQRGFRR
VirWwIF_contig45814	IF_103100	F021262	MSKKYYIKFTTGKELTGTAKEIATQLRNESRLLAITPRKYAKLVAKSYEMSTGMKLRTWTYNSFVKSLGKSLMVMEFKEVK
VirWwIF_contig51960	IF_448440	F008183	VAFDDADFDPVKYGVLWQKVQDMDKKVDKMEHQLEQLLELANRSKGGLWFGMTIASAVSGIIGFVISHWKG
VirWwIF_contig52069	IF_516010	F043390	QHLFSCGDENGLHGKNEDSQKVIALTLTAEQLEVIDGALEMYCMVLAEQNDPHLKYATNAHEAIYNVLESNFGVEA