Sample 2016842003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 2016842003

2016842003: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer

Overview

Basic Information
IMG/M Taxon OID	2016842003 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0051404 \| Ga0026236
Sample Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	36317514
Sequencing Scaffolds	16
Novel Protein Genes	19
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.533365	Long. (^o)	-110.849887	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005302	Metagenome / Metatranscriptome	405	Y
F012577	Metagenome / Metatranscriptome	279	Y
F018115	Metagenome / Metatranscriptome	236	Y
F020182	Metagenome / Metatranscriptome	225	N
F032180	Metagenome / Metatranscriptome	180	Y
F032293	Metagenome / Metatranscriptome	180	Y
F055751	Metagenome / Metatranscriptome	138	Y
F060939	Metagenome / Metatranscriptome	132	N
F072057	Metagenome / Metatranscriptome	121	Y
F076975	Metagenome / Metatranscriptome	117	N
F081382	Metagenome / Metatranscriptome	114	N
F086424	Metagenome / Metatranscriptome	110	Y
F093431	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
YNP16_C10869	Not Available	1509	Open in IMG/M
YNP16_C12611	Not Available	835	Open in IMG/M
YNP16_C3530	Not Available	853	Open in IMG/M
YNP16_C4189	All Organisms → Viruses → Predicted Viral	1097	Open in IMG/M
YNP16_C4421	Not Available	863	Open in IMG/M
YNP16_C459	Not Available	1944	Open in IMG/M
YNP16_C515	Not Available	1403	Open in IMG/M
YNP16_C6225	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
YNP16_C6298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	5378	Open in IMG/M
YNP16_C8254	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
YNP16_C8881	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
YNP16_C9524	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1545	Open in IMG/M
YNP16_C9695	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
YNP16_FYNC29596_b1	Not Available	792	Open in IMG/M
YNP16_FYNC3214_g1	Not Available	708	Open in IMG/M
YNP16_FYNC5120_g1	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP16_C10869	YNP16_376440	F005302	MAHSGVIAGLYAGNFAVEISINGTTWLAVSDANVKVDDVEQTRPSGEAFVGGSSDYATITVGKREPVELTLTFLYDEASGSAANTIYDQFESATPRLGVRWSPRGLVSSARAYSTSNDGSTTGLGVITNVTLQALDASDASPYVAMVTVRTPTIRQYTLGTSPTDLS
YNP16_C10869	YNP16_376450	F004791	MTKPADIFDIDAIRVDRSALTIREAATVLNNELTAPVVARLVRKAIGAQADQFPLRSLKRVYERVLPQIFEPDEAVRSRAAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKRIFDAIGDEGNE
YNP16_C12611	YNP16_58040	F004791	RIRVDRNALTIREAATVLNNELTAPVVARLVRKAIGDQVDQFPLRTLKRVYERVLPKIFEPDEAVRSRVAGLTPAVDRITLGEYHHFLDASERKIAFPPVATTLLMKAYGEDILNEPYAAAALLLKQIFDAVGDEGNE
YNP16_C3530	YNP16_159970	F018115	MSDEAKRFVRWYAHLAEDAPLDPHAARALLRRALADREALAEYLLEQCSPALLGEFINRHWNEALCDAIGSAALRLALRVTQALGRIEDERDRRAALVCFQRGIIPSARVLRRLCEDVNDAR
YNP16_C4189	YNP16_486660	F032180	MWWKIEDYPAKEQEEWVRAVGKYERAAKRDVAARAAGAFVIYWQNDALGYVAGREAPPGAYLVERWVRGKRGWTLYE
YNP16_C4189	YNP16_486670	F005028	MRGDDKRDNDLRNDDLRAAMRFFAERLRGVEATEARLRRWARHKLRNDAQAVAELMLTVGYRATYIRYFLRYHVAHIDPETDNEDITLAVADLQSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKTLERKT
YNP16_C4421	YNP16_111340	F072057	MNERRNGQLGHSGPGSDGQADMFCRSVVAAIAAMLALRLCQYIRKWLQG
YNP16_C459	YNP16_319570	F012577	MLVAIARPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVVTQIGDELIVYCDQLSRTVWRGQIERIEEARDGSIVWHALGFGALQRDARISVVQNMYDMTRWTPVGAGFMIGSGYDSRGDLWEYEVIQSGGNTFVQIRTKKAFTISATTLFFLAYLFDQPERYATIENVERLLVGAVFSTGLANGVWVAPVTAIPAPDAYTLTLGTFTGLSATAPVTATTCYGWVIGVRASGVETVAGTTSVSFRARINDLSSGAIDEGLLSQALNARGGCCNVLLPGSTKVSLEKPDANLREIIEQSAVASLRYHRKRFLRDRPLPVIDFRADSSLTWRFPETTRVTDISKAPNRVFAQYRGYWTDHLTATTSILSLESRRQQLAWRVAGVGEYGSKAIAETRRDEAAAALDRQIAPLTVELDNSRYELMTREGATVPNWAADVSDYAIVPGYFRNAKITSRTISRDRTTYTVSFNPDDFVTVLR
YNP16_C515	YNP16_77840	F055751	MFLAGVNDLSSGGVNAGALAAALTGRGGCCTVVLPTPTDVSIEKSDANLREIIEQSYNFAPTRYHRKRFLRDRPLPTVDFRADSSLTWRFPETTRVTDISKAPNRVFGQYRGYWTDHLTATTSIQSLEKRRQLAWRVAGIGEYGGKTTAEERRDAAAVALDRQIAPLAVELDNTRYELMMSTGVTVPNWAADVSDYAIVPGYFRNAKITSRTISRDRTTYTVSFNPDDFVTVLR
YNP16_C6225	YNP16_133750	F081382	MSKHGEILEIAIVPAGGQAKQVVQRALGKRRAQIRVHSMCDIADARAPTLVLIDGSALQGGESALVEAITTLQQSAWRDTPVIILDDSGADLIRGFATGYAARICLVSSPEAIAQLIDRMMHTAV
YNP16_C6298	YNP16_536840	F060939	MRSPSETAIFAFVEALRGLSSAQITHVDISRRYPYTSQAPAGRDRGIAVLTHRAVDPFGGSELDAFPMWVPESGIGYANDLWGYPTAARGYVSRAGYNIVDPVPADGEPQSLDNEYPDSTDDYYLVAIRRNFWHKLLRDSRAYNTLSMALSDEQARRVRLDIRDLFLGVPMREILERLDVIIQLLQDSSDDTDEVEQLLLQLIAALGAP
YNP16_C8254	YNP16_293640	F076975	MMDGVGGYHRVGDSNYFGAAPALFCGQRGGNLRAEVIPSYSAADIARPAETVLVVEALSFEYGMTCRLRVPAPKDAVDASSPYYGLNYAPRLLGEYQTRNGYRYREGQGFVVCADGHPRRIFHTEQLFMINHRADGAPYYRMQYARE
YNP16_C8881	YNP16_443950	F001564	DQLTCGDWPEKPSLRFLIHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKMGVRIGLDEIRADEYRAMLIVEEERERLDRERFEDRRP
YNP16_C9524	YNP16_128800	F003460	MHDLQHAYEVLHEIIAPRGLYAESTLLLVVNLRRPSELRDVAVELVIRARAGGSPVWRANESLRVPGRMKLRSLAGALFGLFMRAAYDVEAQISLPGDDRPRFSGARARIAPSVTAQL
YNP16_C9524	YNP16_128810	F004367	MGGSTNGNGRDGSEAWVEGLLTGAGASIGRVLDDRQVHAASLTIEVFAYLLAALPVQRVEVRDVIQMMKWYARGINDAKSQQG
YNP16_C9695	YNP16_520820	F032293	MRVRQIGTLVFDADTNIVVDASNQDAPGVGFRADSLFNPQPFAAEIAFRRNTRQQALDAVNTLARELHSYAQRRQAGRFAVAGGATVLVEDATGGATLRAFLRDGSITLLGVEATATGVIARVR
YNP16_FYNC29596_b1	YNP16_11670	F020182	VSIAEIVSAIRDERLQDAMRLLLARECVVTVYAQRMLRVELQERVQLLTPWEPAASLTHKLHALFGIPAPAEPCRECPDRGFPS
YNP16_FYNC3214_g1	YNP16_227750	F093431	VLRRGSLTQTFNEDIVWYITQDRETRQVSVIGYGDTPDSPRIDAELPYQPILPGVIHQNSNFSTTITFEDESQHTKSWQIGGWEDVSTYAGSVGCYRIREEGSWSRPLPFTEATVAATAWFSPQLMNYARVEARVSYMDA
YNP16_FYNC5120_g1	YNP16_350970	F086424	PEPQRLAGTLYAADGSSASAFDPLGQAATRARGMCILFLAENIRVHVQTICNTHTNFIPYYWRLDTAKHSALANAAYTHRVARNGRAGEVLAVPAPPISSEDTETYPTNCVVAYRYRNCFWLPHAMVRSQRAVNIWDADVSAFVFWLFYGLQLAGVRPRYRLPVQIETDHPLEALEASSNPPYSLREQCDFLHTSWDWMRDFARRKGTAIISGVRMGGRDRSASSRQHWGILYNTSYPAEAREAAMRVHQILVAGHREGTTPLRSARP

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