2014642005: Marine plankton microbial communities from Ionian Km3 Station

Overview

Basic Information

• IMG/M Taxon OID: 2014642005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056647 | Gp0051214 | Ga0011163
• Sample Name: Marine plankton microbial communities from Ionian Km3 Station
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7203198
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Deep Mediterranean Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Deep Mediterranean Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea, Ionian Km3 Station
• Coordinates
  • Lat. (^o): 36.4999
  • Long. (^o): 15.693611
  • Alt. (m): N/A
  • Depth (m): 3010

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026397	Metagenome	198	N
F041257	Metagenome / Metatranscriptome	160	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2014696691	Not Available	843
2014698868	Not Available	819

Sequences

Scaffold ID	Protein ID	Family	Sequence
2014696691	2014721838	F026397	LFLTSLFFIFSCADITFYRKPIISVTISSDCHDLYEDNNLYIYISRLGTDWDSDMYVDVGNTEDLAVFVEGKYNITATATSEDSTASNYESIKSIYVYHGEERNVEFDCD
2014698868	2014725015	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQPDGPFDHERFKTLTVLAHAAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNPFETLVLLLFTFQFSRNERFDLEMGKTEPIDRSHPLSKALMAWVWWDPSSEASCVDRFYPWEYGKERTSRMVAIASGLLPEPIDVTSSGDIPPSPPRTQ