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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2014642004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0056617 | Gp0051072 | Ga0011162 |
| Sample Name | Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 7_Deep_abyss_4000m |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 11028821 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium | 1 |
| Not Available | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C449 | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | oceanic abyssopelagic zone biome → abyssal plain → planktonic material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Hawaii Ocean Time Series, North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.45 | Long. (o) | -158.0 | Alt. (m) | N/A | Depth (m) | 4000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001651 | Metagenome / Metatranscriptome | 657 | Y |
| F017722 | Metagenome / Metatranscriptome | 239 | Y |
| F021184 | Metagenome | 220 | Y |
| F031535 | Metagenome | 182 | N |
| F032044 | Metagenome | 181 | Y |
| F041242 | Metagenome / Metatranscriptome | 160 | Y |
| F051987 | Metagenome / Metatranscriptome | 143 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2014683963 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium | 978 | Open in IMG/M |
| 2014685397 | Not Available | 1005 | Open in IMG/M |
| 2014686385 | Not Available | 1026 | Open in IMG/M |
| 2014687392 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 | 935 | Open in IMG/M |
| 2014687395 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 899 | Open in IMG/M |
| 2014692460 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C449 | 1041 | Open in IMG/M |
| 2014692620 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 877 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2014683963 | 2014703046 | F001651 | MTIAGKPIPEGGYIVALQNGKKIALAQRRHRVIQAKIEGRSEAEIAEQEGVAQYTVWKDIRAYLGEVRREDKAAVQAEYDLQRARYERLLLRWWDQAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQFQQQNVMAGGVTFADLVREEMDGAGQGVEVVGLACDNVDPG |
| 2014685397 | 2014705249 | F021184 | MVSRILRHFNRNLLNEYAGNETLTVDWAEMRSGLDDREAMTSRVTGLFAGGIVTLNEAREQLGLEAVSDGAIRRIPAAIFEVAEGTPAPVAVGAAPVEESLPVGTLKEWDSIPSLKAPRVARRAGILRRQLKKDREEETDQMAKRVQRHFRGLRNRVDGILGRWMERTSSDSKDFPPGFDANLFYSEDALADLQAIIEQAMLRMSKQTVARINATGLAGTLEWTEQLPFVEAFLGQAPARATMIHRFTGRAIQNAVTLADTKYERSTW |
| 2014686385 | 2014706840 | F051987 | MMNWIYSLLEKYSSRISCWAWNKRWGDRNNARYRSSKTGKFYTLNKKTGEIK |
| 2014687392 | 2014708381 | F032044 | LRRQLLEDREEETDQMAKRVQRHFRGLRNRVDGILGRWMERSGAESKDFPPGFDPSMLDLPDGITDLQAIIEQAMLRMSKKTVDAINTIGVAGTLEWSEQLPFVQSVLVQAPARAAIIHRTTNRAIQRGVTIALENGYSIAQLARGVPTADPPFPGLRSILTETESRARTIARTEVMRTQNLTSVGFFKEQGFSYVRADDIDGDPDDNYIDPGDPYGRTCAERHNQIYTVEQAQDIDDHPNGTLNWQPMPRDYRPGETVV |
| 2014687395 | 2014708386 | F017722 | LDTKELRSQAGALLDQAQVAMDQDEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSNDVSVYNAMDNTARIKSDYKPASWMKGLPAMAQPEWVLDLCGDNIKDQAQFMTDTFVKWMRSPSDNVFWKTASPDEVKSDVR |
| 2014692460 | 2014715728 | F041242 | MGKTRKATWQDHHDGASFTEESVWQAIADAEGLDYSDIADGDLVDWL |
| 2014692620 | 2014715969 | F031535 | DSMISPSPKATTANIIARVPKNTKAYVAIASANQIRGLTNEVNHFQVPFKTFEFYTVNIE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |