2014642003: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 6_Oxygen_minimum_layer_770m

Overview

Basic Information

• IMG/M Taxon OID: 2014642003
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056617 | Gp0051091 | Ga0011161
• Sample Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 6_Oxygen_minimum_layer_770m
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11811597
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Hawaii Ocean Time Series, North Pacific Ocean
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F031645	Metagenome	182	Y
F032810	Metagenome	179	N
F047119	Metagenome / Metatranscriptome	150	N
F087736	Metagenome	110	Y
F099438	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2014670414	Not Available	976
2014677706	Not Available	922
2014679009	Not Available	900
2014680519	Not Available	1020
2014680962	Not Available	930
2014680990	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	989

Sequences

Scaffold ID	Protein ID	Family	Sequence
2014670414	2014683243	F099438	MKKFSIISKSVASFLAVIMFMTPVSSVFAQQAVDSREITVMAERDAKDDAEEGGTFLWWCGAFLLTFVIPYVGGLPLAAYGYFAGGEPDGVPAARMMDVEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASADDEFTNEAIDFHLGLMGFDKP
2014677706	2014693764	F047119	MTTKYKYLFPPPSNVMLTENEYFNLTMPDNERPISGFYWGWCRQYGNDLSWQGTYDQYTPLDVCPWCHGDHTCDVGRVVPLLDPEEIEHDLDENGHRPDEVNVYPGVPGDFRPIVYIYLDELPPGRSWADIIRNRQMRHIVQRQHTTEVHFFARTRESMCWQLSDTRNVMTQSITNWLRFTDPSFAGVITFRTRDGRINRRY
2014679009	2014695666	F087736	MMMKMVATMHVITITGRPTLAHSLVVIGRGPRSLMATVMTFALEPIGVALPPNPAPIARA
2014680519	2014697948	F031645	FLLXRTPPGGAASKIENQPCLQETICHKLAPSKDFTIMPPKLKHSAPRKTKTVPGILFNNVNLSL
2014680962	2014698592	F005948	MVELNHNVVSFNSDTLIKGSHGVLVNVYVSKVGSGTNKVEFRNGTSASAPVEFTIFTAAQGTYVGINRRFEAGIFADCTGSAEVTAVFK
2014680990	2014698636	F032810	ELCFDSVEKIVSLKSALTRAVANISINLETAIERLEMNQFFLEGEPLADFKLKEGLIKVDNKDIEYIQRQYTDSLWETMQILLPHYRTTKE