2014031006: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots

Overview

Basic Information

• IMG/M Taxon OID: 2014031006
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051243 | Ga0026378
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31857986
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.710087
  • Long. (^o): -110.7413395
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015737	Metagenome / Metatranscriptome	252	N
F065815	Metagenome / Metatranscriptome	127	N
F070749	Metagenome / Metatranscriptome	122	Y
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F075804	Metagenome / Metatranscriptome	118	N
F078763	Metagenome / Metatranscriptome	116	N
F080677	Metagenome / Metatranscriptome	115	N
F092122	Metagenome / Metatranscriptome	107	Y
F094604	Metagenome / Metatranscriptome	106	Y
F097407	Metagenome / Metatranscriptome	104	N
F098323	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP7_C2148	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1644
YNP7_C4652	Not Available	1190
YNP7_C5491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1416
YNP7_C5636	All Organisms → cellular organisms → Bacteria	6265
YNP7_C569	Not Available	1250
YNP7_C6008	Not Available	1953
YNP7_C662	Not Available	1650
YNP7_C6918	Not Available	5353
YNP7_C8133	Not Available	1997
YNP7_FUBI13498_g1	Not Available	821
YNP7_FUBI14985_b1	Not Available	815
YNP7_FUBI40154_g1	Not Available	894

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP7_C2148	YNP7_58720	F070749	MNLTILARFAPILLLLSIACEGGKKSTFQLPPDIGKGMSPADSLRAVLNYLKGRREYEAEMLRFHYMYEYIWTLARQKPDTLPALVQELRSWAQKSRYPLGEGVATLGEAVGWRSQGQYDSALSRAQVA
YNP7_C4652	YNP7_128500	F098323	MLKNKSWILLVIFTLFGVINTSIPVWTQENTTTQFDNAILANNQQPVVPTGRADTSVDPDCQNLINEIVKCPSGNGTCVAEKLRKGNSLTEKAKRCVGLNSNNLDDKQKRDLINKVCLALPATSNNTNEDRIFFCQACIGRGVTKPSDWSNEDIVNKCNSSAVNGTTRKLVNRQVDKNGQVKEVLATRINVKEKPLGVARATEDNFYLTVANQLVNPFSNQSNFVFANTQSQQKTLIIEASGISNVVLGKGIEKSQGEICTFNFSPERVGE
YNP7_C5491	YNP7_150270	F073601	MLQAKATCLVKVLPAKRREGQRMFGRLHFAWRCSIKIMACGSIVRTLPVEKKALAGMGVLLQQG
YNP7_C5636	YNP7_154330	F078763	MSNKQFFSGLEEALARLVGVILTLTFFLIYIWAVNGVSLSWLQAFFAFGLFWLVYEAIAFGLFILFDFFAKKSESETSTKNPNGPDTGTGSVFTGDSGSNSACDSGVGEGGGNC
YNP7_C569	YNP7_14590	F073593	FVIFLFVYFFSLSLLVHAAQTTTPSSDSTQNNPILSQLSGLNILQNVCIYPGFPDSSCDRDNSILLTVWEYLIRFVALIGGFTFIYAGYLTMMDKYEEAKKIISGIVQGVFATLLINVAINLIVESAFPKINTSQCPPGQVVRSNIFGDYCINLNINPVIDFAIVVINNLLLPASAIIAVLFFLAGLYNLLISGGKATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK
YNP7_C6008	YNP7_163290	F015737	LSLNDLIRKLKDLFSYHYGQLLEQESLAFATQFWSNLVSATIPTEKTKLQPKTAFQQTLLSWQEKQFTIELIPEILKEGELTVDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEVYAPLFINLNCEYLPISEDLPELLKAVTQRLLTTRKSN
YNP7_C662	YNP7_17100	F075804	MLKHISSGLARSKKYRLWQEAYWLVLVNQALETFTKEHLQLKNPEIRAFVKLQGQVLHIKIAAKEPTVLAALKIAQKALLNFLHQSLPQKAQLVTQLKISFLVK
YNP7_C6918	YNP7_186910	F080677	MFKEFYQELIENFTWWSVGMFALLAGAFNLTQGVWGWVSAICFLLASMVTLPIFRSWLTSKIIVLQSPKLVRKITIGAMFLLLLAVILTPVSVDQQTTFASEARSDSTTELPIAKQSTETVPLIIKLISSLGG
YNP7_C8133	YNP7_217240	F092122	MFNTLLRHLGIPPKPEETQGPSNPNEVEVSAAIETATEAMNKLIDSTLAAVSKIREMTSSIGLDPLLEIMRKAYEGLYFVIGLPTTPVSNTVSSNATS
YNP7_FUBI13498_g1	YNP7_274850	F097407	MSSDFPSLKEEYHHLYEYVSTLAWMQYEQMKKKGKEYTGYVYFFGRTVHRLLHPLYFFHQTEEPKFWFEEQTFDPNNPAETFPTWEAKKAYLLARFREKKFEIYDANFSRKVLSRYNHQTIQWLVKNNYHRLIEFDKCLGFYLDILNWTEEHFISFYENRLVNLLVTDYLPKTLSTTESWCQVV
YNP7_FUBI14985_b1	YNP7_393840	F065815	MQPETNNPNPQANQPTNPTEETSVTDAKKSNTSTPAVEQQSKSGFYQDLNSVFLVTILSLVIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVIMVQVESLVETRILPKLQKFSQPTLLLVNFLVLVGLILGMYWLVSNFVNYLNITFWLK
YNP7_FUBI40154_g1	YNP7_435850	F094604	MTNERITELLNVIEARQSHYAELRAIAGGALPSPWSDWHHYEPAGSIASDIVAVLEASLVGRIDLRIDPDDPVADQLISILYNKHLHPLVREAVRDFVVVGWGGIAISPFGPVRLKPEHSIAGKDWYLRRYELDVRAARQRYGKRKVFDGKSGSVLLIETLQDGKLQVRFGDAVVYSSDWDYEPRLLVGDERPKLVDGSLHGAPIGIVEQCKDLFIDHHILKS