2014031004: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP9 Dragon Spring, Norris Geyser Basin

Overview

Basic Information

• IMG/M Taxon OID: 2014031004
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051343 | Ga0026372
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP9 Dragon Spring, Norris Geyser Basin
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18602353
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum → unclassified Hydrogenobaculum → Hydrogenobaculum sp. Y04AAS1	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CG08_land_8_20_14_0_20_45_12	1
Not Available	4
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7318889
  • Long. (^o): -110.7110833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039213	Metagenome / Metatranscriptome	164	Y
F041867	Metagenome / Metatranscriptome	159	Y
F059130	Metagenome	134	N
F061391	Metagenome	132	N
F083455	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP9_C2026	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum → unclassified Hydrogenobaculum → Hydrogenobaculum sp. Y04AAS1	6848
YNP9_C2029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CG08_land_8_20_14_0_20_45_12	1430
YNP9_FWOU10506_g1	Not Available	803
YNP9_FWOU15907_b1	Not Available	781
YNP9_FWOU16338_b1	Not Available	807
YNP9_FWOU19993_g1	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	758
YNP9_FWOU21297_g1	Not Available	798

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP9_C2026	YNP9_63420	F083455	MMHMDLFSYQLDISSLWAKDFIVALLGTALAVSLTLANKKGESVFIQLAMIMPVAFAIHALPHINYISLNTIFDDGIIAIGISLVLDYITTKAQRPDLKYRFINAYILLTLYVIIKYQSDVLEFALNSVLITIVFALITYIPPIDDIL
YNP9_C2029	YNP9_63530	F083455	ILGGALAVSLTLANKKGESLPIKFAMILPIASAIHNLEHVNYISFASAFDDIVISAGISLVLDYVTTKAERPDLKYRFINIYVLLTLYAIIKYQTDVFKFMLNSVLMAVVFVLITFLPPIIML
YNP9_FWOU10506_g1	YNP9_261520	F059130	MDQLRVLEKQSGFLRLIYYLGENGEKTITEIMEEADIPVHQLYASIEKALQLKLVKKRVDRSTYPNKNLISLTTKGKKLALKLKEITDLLTFR
YNP9_FWOU15907_b1	YNP9_207890	F059130	MDQLRVLEKQSGFLRLIYYLGENGEKTITEIMEGADIPVHQLYASIEKALQLKLVKRRIDRSTYPNKNLISLTTKGEKLALKLKEITDLLTVQ
YNP9_FWOU16338_b1	YNP9_261540	F041867	MNAFDREFWNGALKASIMIERDLKKLLNEASEGEKEGIKVAIARVREMKESIETLHGNSVMKALREIEIDQK
YNP9_FWOU19993_g1	YNP9_237150	F039213	VRKLVTVSYQYGTITVPQYSRIRINLKSGKVVYGFFVAEINNNFVVIIPNNLALFQKGIVKGSRASIYKGTIRDFKFDKEAIVSYSTNPNNSVTNNGGNVNALH
YNP9_FWOU21297_g1	YNP9_206960	F061391	VSEVIQTPIDITELLTLTGRSRVLTEKVKRCYALVTNPKTFEGVAASLRGYDAASGGWFIPHATHAKQVIQPVIQECVVEPLTMVATGNDAHSLVTLAEFADMLGVDVDVRAVSLQDIIELKLSSCLPQGDGKKPPAYADLVNATSNCLREIVTKALVTLEHVGAAIAFTSRRG