2013954001: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring

Overview

Basic Information

• IMG/M Taxon OID: 2013954001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051332 | Ga0026351
• Sample Name: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16164785
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum	1
Not Available	10
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733473
  • Long. (^o): -110.70007
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F021808	Metagenome / Metatranscriptome	217	Y
F031931	Metagenome	181	N
F048413	Metagenome / Metatranscriptome	148	N
F051270	Metagenome	144	N
F058700	Metagenome / Metatranscriptome	134	N
F059131	Metagenome	134	N
F062912	Metagenome / Metatranscriptome	130	Y
F063429	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F077497	Metagenome / Metatranscriptome	117	Y
F080245	Metagenome	115	N
F083455	Metagenome / Metatranscriptome	113	Y
F087442	Metagenome / Metatranscriptome	110	N
F090627	Metagenome / Metatranscriptome	108	N
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP14_C104	All Organisms → Viruses → Predicted Viral	1311
YNP14_C1239	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum	4610
YNP14_C1527	Not Available	2129
YNP14_C1760	Not Available	1614
YNP14_C178	All Organisms → Viruses → Predicted Viral	1219
YNP14_C2190	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1627
YNP14_C80	Not Available	1047
YNP14_FUBW10673_g1	Not Available	863
YNP14_FUBW15446_g1	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	798
YNP14_FUBW18949_b1	Not Available	767
YNP14_FUBW22494_b1	Not Available	749
YNP14_FUBW23417_b1	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	835
YNP14_FUBW26696_b1	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	688
YNP14_FUBW3894_g1	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	864
YNP14_FUBW4292_g1	Not Available	876
YNP14_FUBW599_g1	Not Available	806
YNP14_FUBW7757_b1	Not Available	842
YNP14_FUBW7757_g1	Not Available	865

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP14_C104	YNP14_03540	F031931	VSSTIYPFKVADAIPISLGLTATQGGVQLSQGYINLYSQILAETDSAVFHAIIYSELVPFQSSRLVESISPIISLESLIKVLQQQDNIQPQLYGAVEQALLPPGVTLCTPQSITSGSVSGETVKENIDVQYASCLPPEGLNFDEINMTPYVGFPPINQTDEITVSYSLSVK
YNP14_C1239	YNP14_39240	F083455	MMHMDLFSYQLGISSLWAKDFIVALLGTTLAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDDVIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYQSDVLKFMLNSVLMTIAFALITYIPPVDDIL
YNP14_C1527	YNP14_49190	F097670	MMNYKIFDKNIFFETDHIIIIDLKNNEIKHEEKYYFYDGKELKEIKDLQEYNLKLYEISQKIQEEFTKFSTKYAKPPIGYMPISNIIYEFMLNRNNIVLISYANISKVENEVSKEITNDTIKIIVKSKTIFNKEWNFESTQNLSPEIKDNTTKIIEKALKSAKMILKNNL
YNP14_C1527	YNP14_49230	F099549	MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSTDTRTFDNEELKNKLRAAISYALGLLASTSGYSMSEKIQRDVLTAKNTLIALFDAIMTKPELTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
YNP14_C1760	YNP14_55790	F075084	MRPCRKDLCLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKVLTKMTEMCSIYEVR
YNP14_C1760	YNP14_55800	F080245	VIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
YNP14_C1760	YNP14_55810	F087442	MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESVW
YNP14_C178	YNP14_05850	F051270	MRVGIYGYLRIKELGKTIKNNINYQQLMSVLFQLLNNTIGNIIGANYIDVQGYGNNATVTVGANTITFSASITVPYLNGFNAILYGYFNLGGNHYMIQLATINTAEQIPAGTYTFEWVINFSDSSGIIFNLMGTVTY
YNP14_C2190	YNP14_70430	F077497	GKMDKEQISKIEEIIEKHLFEETNNSAYELNKIYAITQYLIYQQLKEINKKLDSIDENLYELANPGIWKK
YNP14_C80	YNP14_02420	F090627	MHLPGRLAIGINGHVRVMLNGKVIYDDTNAITTQFLQYLQNMLQGTVPTVNSIYVIAKPIGTPIALNSLNIQNGYQQVNMTFANQNVPQPVQALELWISTNVGNYPVAVLQLQNPITQSGQIVVQWTITIQLPSIIQGAQVFAISDSIPQIIMQLFIPQQYFSNPIQLTNTQPTLQIYSTPQVTPTVIVPSNAGAGAVAYIDTSSTISTFSALLYLLGQYIMTVAQGNLNEQAVNSLIIASAFITFTSSNITSVVP
YNP14_FUBW10673_g1	YNP14_147100	F048413	MNQEMNKVTVVIKYERDYAEYRYILTKIDEMAEKLNIDKYLLRYLILKEFANNEKWQNELIEKLRKNG
YNP14_FUBW15446_g1	YNP14_172300	F021808	MTEEPPYGTIAWYFFEIDERERQIYELVFDIDQKIAKVKDLLNEIDLLKAQLETNVNIGK
YNP14_FUBW18949_b1	YNP14_158060	F099549	MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSTDTRTFDNEELKNKLRAAISYALGLLASTSGYSMSEKIQRDVLTAKNTLIALFDAIMIKPQLTYIDLLDIYFELIQKVSII
YNP14_FUBW22494_b1	YNP14_224050	F059131	FYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSSTLPVATSGVPPKFVAEEVVSARLPVKVT
YNP14_FUBW22494_b1	YNP14_224060	F006070	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAERYLSLGFNVFHRCRVLGFVRAHIDLFYGGV
YNP14_FUBW23417_b1	YNP14_206560	F021808	MMNEEPPYGTIAWYFFEIDERQRQIYELVFDIDQKIAKVKDLLNEIDILKAQLETNVNVGKI
YNP14_FUBW26696_b1	YNP14_195000	F062912	MDPQVILAETYNLFLISDIVEDGSEIDRELVDLLANKDHNNMAKTVIYTLIYTVNNHLVYENIRQTYINDAIDLLYMIDRIGFDNERIMKKFVKLLYQFYSYSLQNRINFIA
YNP14_FUBW3894_g1	YNP14_231400	F062912	MDPSEVLEKAYNLFLISEIIENESNIDKELEGLLIDRDYNNIAKTIIYALMHTLNNDPAYRNIRQIYINDAIDLLYMIDRMGFDNERIMKKFVNLLYQFYSYSLQYKIDFIADKEKRELVKAKLNELVHIIQWEQ
YNP14_FUBW4292_g1	YNP14_141150	F062912	MDPQTILAKTYNLFLVSKIIEKESKIDIEIESLLANRDYNNIAKTLIYALMYTLNNDPAYRNIRQIYINEMIDLLYMIDRSGFDDEIIIKKFINFLYRFYSYSLQYKIDFIADKEKREFVKAKLAELYMLIEE
YNP14_FUBW599_g1	YNP14_240360	F099549	ISLVTYNIDMDETTQYVYQVPDLKVIFLMDFGNVIRQIVDLLTYSDISADTKTFDREELRNKLRAAISYALALLASTWGYSMSEQDQEGVKMAKAKLTALFNRVVSNSQLTYLELLDIYFTLIQQVSIIFNYKTPVPRPRPGNYEIT
YNP14_FUBW7757_b1	YNP14_238260	F063429	MGMSGEIENIAQRIEQAFTDSYEQDVKNGIVPWADASRIIEYMEYMAQEGLDSENLIEYLAKRSGIGLDVFKQMWAKLTDEQKEDLLNEIAHNIAFDGFTRLIKAIVDDLNRQKKYRKDRGKVLKYALYYICDDDSVDYDGLEGVIISVFWPENKKKKDEEAYEDFIRGLELAKYLDEETVKEAITTYLVFGIAESC
YNP14_FUBW7757_g1	YNP14_242470	F058700	MVNGWLEDLVRSDFPPWADAYEQIQMLEDIEGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTSEQKNEVLGSVIHEMALYGIEWLFNDIAYDLINNEKYNKDAGKVVEAAKDYLNKRISYDDLMDRIADVFWPTEEDKKSTAYEDFLRGTGLADYIDKDELNEIIKEYLVEKVGYRLPLLSKDVKQK