2013515001: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring

Overview

Basic Information

• IMG/M Taxon OID: 2013515001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051324 | Ga0026380
• Sample Name: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21158971
• Sequencing Scaffolds: 29
• Novel Protein Genes: 31
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → environmental samples → uncultured Acidilobus sp. CIS	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733519
  • Long. (^o): -110.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004156	Metagenome / Metatranscriptome	450	Y
F008606	Metagenome / Metatranscriptome	330	Y
F013613	Metagenome / Metatranscriptome	269	Y
F014278	Metagenome / Metatranscriptome	264	N
F032562	Metagenome	179	N
F036493	Metagenome	170	N
F048413	Metagenome / Metatranscriptome	148	N
F058699	Metagenome / Metatranscriptome	134	N
F061983	Metagenome / Metatranscriptome	131	Y
F062912	Metagenome / Metatranscriptome	130	Y
F076263	Metagenome / Metatranscriptome	118	Y
F077496	Metagenome / Metatranscriptome	117	N
F077502	Metagenome / Metatranscriptome	117	N
F080679	Metagenome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F083455	Metagenome / Metatranscriptome	113	Y
F084460	Metagenome / Metatranscriptome	112	N
F085903	Metagenome	111	Y
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y
F096263	Metagenome / Metatranscriptome	105	N
F099548	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP8_C1119	Not Available	2721
YNP8_C1123	Not Available	1419
YNP8_C1357	All Organisms → Viruses → Predicted Viral	1170
YNP8_C1402	Not Available	1512
YNP8_C188	Not Available	2446
YNP8_C2500	Not Available	1375
YNP8_C2596	All Organisms → Viruses → Predicted Viral	4905
YNP8_C2979	All Organisms → Viruses → Predicted Viral	2696
YNP8_C4007	All Organisms → cellular organisms → Archaea → TACK group	2616
YNP8_C4262	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus	1660
YNP8_C5695	Not Available	1289
YNP8_C6052	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → environmental samples → uncultured Acidilobus sp. CIS	1237
YNP8_C6117	Not Available	1243
YNP8_FUBN13239_g1	Not Available	834
YNP8_FUBN16244_g1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	807
YNP8_FUBN17680_g1	Not Available	831
YNP8_FUBN17764_g1	Not Available	858
YNP8_FUBN18239_g1	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	840
YNP8_FUBN1925_g1	Not Available	833
YNP8_FUBN19320_g1	Not Available	880
YNP8_FUBN19561_b1	Not Available	745
YNP8_FUBN25236_b1	Not Available	817
YNP8_FUBN26297_b2	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	766
YNP8_FUBN26792_b1	Not Available	832
YNP8_FUBN27822_g1	Not Available	822
YNP8_FUBN3483_b1	Not Available	623
YNP8_FUBN6851_b1	Not Available	847
YNP8_FUBN7016_b1	Not Available	792
YNP8_FUBN7016_g1	Not Available	835

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP8_C1119	YNP8_29390	F084460	MSEKINPDDLLKKVDEIVNKAIAKHLAEMSRQYTPQEINIKFTKNWILVFLPNGYLKISKKLSEGQYKLKILQYKEKK
YNP8_C1123	YNP8_29610	F008606	VGLVEVGLVAEARDPEGDPESRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQELAEIKGAVTDIRRNSVAILASVLTVLVAVVIGLIVH
YNP8_C1357	YNP8_35780	F008606	VALVAEARDPISDPEGRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQEIAEIKGAVNEVRRNSVAILASILTVLVTVVIGLIVH
YNP8_C1402	YNP8_36690	F048413	MDRVTIVIKYEKDYAEYRYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELIEKLRKNG
YNP8_C188	YNP8_04810	F083455	MMHMDLFSYQLGISSLWAKDFIVALLGIALAVSLMLANKKGESLLIQSTMMMPVAFAIHALPHINYISLKTIFDYGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLITIVFALITYIPPVDDIL
YNP8_C2500	YNP8_63880	F087445	MSASSSKPTDELVQRLLNMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVIENARRDRKPMDRFVNMIMDMVETMLKSKAMSLTDEDREKLREKVKEMIKDEE
YNP8_C2596	YNP8_66340	F004156	VRLKLAKEFELTPIDRKAISALLEGIIVALTRLGYLDQDRANELIEKLNNNVLNVGQLRLLTDVVVNWFAVCGYFNEDETSHLQELFNHLWGYYDMPLPKSRKKKRRTC
YNP8_C2979	YNP8_77590	F004156	MRLKLAKEFELTPIMRKTISAMLEGVIVTLTRLGYLEQDRANELIEKLNTDALNVGQLRLLTDIVVNWFAVSGYFSEDETEHLQELFNHLWGYYDMPLPKSRKRKRRTC
YNP8_C4007	YNP8_104540	F077496	VARLSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDIKKELEARAVARRKSLSEYAVGLILKGLEAEEAERSAKAEEVP
YNP8_C4007	YNP8_104550	F013613	VSRETYGRIVGLARSRGLSVSEVVEELLTRGLEGSVAVAADPPDPPEDSLQGALKGLEPLEREKVLQFMKGLEDAEAKLAKLGPYVKQQANTWRFTLQDIMNQQEVTKLRDTVFNLRHTYEKKIKRIVRDPTALNMIGERLLRLMKELGVPT
YNP8_C4262	YNP8_110830	F096263	MELSCELMELTVELTELRVPDMLDSVPLMELRSELTVLRSLLMVPRLLDTPDSVELMELTVELTELNVELTEPSCELSEPSVLFMLVR
YNP8_C5695	YNP8_164160	F048413	MNQKMDKVTIVIKYEKDYAEYRYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELMEKLKKNG
YNP8_C6052	YNP8_173630	F096263	MEVTVELTELRVPDMLDSVPLMELRSELTVLRSLLMVPRLLDTPDSVELMELTVELTELNVELTELSCELSEPSVLFMLVR
YNP8_C6117	YNP8_175400	F032562	VSEEKGSKVSLLSEDRLSVKTFADTNHNTTRYFAEIEINGKRIASEKHESLDVFKDFERTIENLYRKAEILKELNSPRAADALAEDMINDIAELVLLTRALLDKIESWRLWKSQEPNL
YNP8_FUBN13239_g1	YNP8_215150	F084460	MSQINPDDLLKRIDEIVNKAIAKHLAEMSRQYTPQEINIKFTKNWILVFLPNGYLKISKKLSEGQYKLKILQYKEKK
YNP8_FUBN16244_g1	YNP8_227960	F099548	MIDLKHAIARVIVILIKGAPGDCISITPSLLDNMIGDAREALRLLRVLYLQGILDRGYGAYTLCLEDNPQLWATVKRLPIDEAVTWLLWLMRCPDGKPINTG
YNP8_FUBN17680_g1	YNP8_320150	F062912	MDPQAILAETYNLFLISDIVEKESKIDIELENLLANKDYNNMAKTLIYALMYTINEDPAYRDIRQIYMNYLIDLLHMIDRIGFNNEKIIKIFVKLIYQFYSYSLQYKINFITDKEKRELVKAKLDELISIVQWEQ
YNP8_FUBN17764_g1	YNP8_303820	F081547	MPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA
YNP8_FUBN17764_g1	YNP8_303830	F076263	MSAPYYHETSIFITWKLELKNMPSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
YNP8_FUBN18239_g1	YNP8_210010	F036493	VRALSLSPIVLSSTLVWVLTVAVAVVASIKVRQSSVFNALIAIASTLIWATVAPGVSLHVRYWPTIAFALLVAIFIFEVFAFGLIMLWKEYILKGYQTE
YNP8_FUBN1925_g1	YNP8_185430	F014278	MSIRVPKVVDRSFLKGLALAIGVPALVIFILGLLFRPPTIIYVHAVPVWTTTAVQKNITITINEDYASWATLYCNVSSSAPINVWLARASDYYSGPLTVRLDASAPNYTVTTGWGVTINNSSIAYIEQAILHVYGNNVSFIVNLTKGKYVLFIGASQPNAVIEVHSCFITYNVYTTEPSPLEQFLNRVFG
YNP8_FUBN19320_g1	YNP8_272150	F008606	VEVVLVAEEGRDPEGDPDVRSYDKLVELSERVNALSGQVVSLTERVTRLEEENRWLRQEIAEIKGAVNEVRRNGWLILASTITVLITVIIGLIVH
YNP8_FUBN19561_b1	YNP8_292460	F077502	VVTMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKQQVDAYFLKKLNDIYDKYYE
YNP8_FUBN25236_b1	YNP8_282730	F048413	MDKITIWIAYEKDYAEYRYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELIEKLKKNG
YNP8_FUBN26297_b2	YNP8_245300	F058699	IEEENEPYRRLTIEWYKDLETGIFLAKLTVEGEGIKEGKREAVFTLSSDRIDDVDLLNPSELVEKLMLNSDSLNDLINYIGGDLIRSTLGNLNSMSVADYLIYFFIKMLAEVIAKGVIILDANKLKMSLSGEKS
YNP8_FUBN26792_b1	YNP8_305680	F080679	SRKSLRIIKYLYTNGYATLRILEKSLKMNGVTVKAYIDLLHKYGIVKVSRVGRAYVIMLNQEGKYTKAILSFLREVGYL
YNP8_FUBN27822_g1	YNP8_250110	F032562	VSEGKGSKVSLLSEDRLSVKTFADTNHNTTRYFAEIEVNGRKTTSEKHTSTDLFKDFERTVESLYRKAEILQTLSSPRAADALAEDMLNDIAELILLTRALLDKIKSWRLWKQEP
YNP8_FUBN3483_b1	YNP8_204010	F008606	VGLVAEARDPIGDPEGRSYDKLVELSGQVNELRGQVVSLAERVTRLEEENRWLRQEIAEIKGTVNEVRRNSVAILASILTVLVTVLIELLTRLPIAH
YNP8_FUBN6851_b1	YNP8_208510	F085903	VVGVNSLFKAFLTAVVIVLIVAGSLYETAIGMKTSDYALFLKTHPPALALFILLYALVGVFFYIIARWWS
YNP8_FUBN7016_b1	YNP8_195460	F087442	MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
YNP8_FUBN7016_g1	YNP8_265270	F061983	LKKYVFKVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYSDVIDVKKLKDVGAIVVKEQDIQPVRTMKTLVAKWYNKKLG