2012990007: Hot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)

Overview

Basic Information

• IMG/M Taxon OID: 2012990007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045192 | Gp0051284 | Ga0011169
• Sample Name: Hot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9919326
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.731451
  • Long. (^o): -110.7113131
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F020733	Metagenome / Metatranscriptome	222	Y
F026309	Metagenome / Metatranscriptome	198	Y
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N
F032339	Metagenome	180	Y
F033507	Metagenome / Metatranscriptome	177	Y
F042427	Metagenome / Metatranscriptome	158	Y
F059130	Metagenome	134	N
F084460	Metagenome / Metatranscriptome	112	N
F095752	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
BEDJCVIAssemblies_1105333867479	Not Available	831
BEDJCVIAssemblies_1105333879736	Not Available	928
BEDJCVIAssemblies_1105333890728	Not Available	970
BEDJCVIAssemblies_1105333900756	Not Available	962
BEDJCVIAssemblies_1105333906489	Not Available	910
BEDJCVIAssemblies_1105333909518	Not Available	964
BEDJCVIAssemblies_1105333917423	Not Available	923
BEDJCVIAssemblies_1105430040350	Not Available	926
BEDJCVIAssemblies_1105430041080	Not Available	840
BEDJCVIAssemblies_1105430059177	Not Available	814
BEDJCVIAssemblies_1105430079341	Not Available	816
BEDJCVIAssemblies_1106445181589	Not Available	897
BEDJCVIAssemblies_1106445181923	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C	909
BEDJCVIAssemblies_1106445183424	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	1319
BEDJCVIAssemblies_1106445183693	All Organisms → Viruses → Predicted Viral	1481
BEDJCVIAssemblies_1106445183722	Not Available	2477

Sequences

Scaffold ID	Protein ID	Family	Sequence
BEDJCVIAssemblies_1105333867479	BEDJCVIAssemblies_57360	F020733	MSEIVWDDKKKEYVRAEDLRERKLIQKIITELIQALQSNYTLQIQINLQNGTGVITIVPKQK
BEDJCVIAssemblies_1105333879736	BEDJCVIAssemblies_58690	F059130	MDQLRVLEKQSGFLRLIYYLGENGEKTITEIMEGADIPVHQLYASIEKALQLKLVKRRIDKSSYPNKNLISLTTKGKKLALKLKEITDLLTFQ
BEDJCVIAssemblies_1105333890728	BEDJCVIAssemblies_62740	F026309	MSLPAPLSNPNLFIGLVIFIVASILLYLGKLPLSAWTTIVGVLLGYYFGYQHALLKERRTSG
BEDJCVIAssemblies_1105333900756	BEDJCVIAssemblies_70270	F032339	MFALTVASIAIALLLTYNAVIVKRILAEQNVFNIPRWATIGFVLGSMEYPLYFIAIFAVLAAIYLIYVRKIKEYRAKSLAIGILLILEFMAMIQPMGDGLNDALTYYYVATHGAHEFNYTRLTGCFYENESSNA
BEDJCVIAssemblies_1105333906489	BEDJCVIAssemblies_78780	F042427	PDSVSLPLTLGTCECPCHIGGEPYSCGAMCWHPQLDANEYAVELASSTNNIDHCVRLLAVYSGGKLRYLVFDPSNGSIQRFEVV
BEDJCVIAssemblies_1105333909518	BEDJCVIAssemblies_79840	F020733	MSEIVWDDEKKEYVRAEEIRERKLIQKIVQELINALQNNYTLQIQINLQNGTGTITIVPKQK
BEDJCVIAssemblies_1105333917423	BEDJCVIAssemblies_87680	F020733	MSEVVWDDEKKEYVRAEEIQERKLIQKIVQELINALQNNYTLQIQINLQNGTGTIVIVPKQK
BEDJCVIAssemblies_1105430040350	BEDJCVIAssemblies_116110	F095752	MVSIPALLEIDPYLRILLETAHQDGWDARPLYESLILDEMDYFTFRRVFLEYLSQEFQEIALSVFTKIEEVMLRSARASVPQ
BEDJCVIAssemblies_1105430041080	BEDJCVIAssemblies_116360	F095752	MVSVPALLEIDPYLRILLETAHQDGWDARPLYESLILDEMDYFTFRRVFLEYLSQQFQEIALSVFTKIEEVMLSAGASVPQ
BEDJCVIAssemblies_1105430059177	BEDJCVIAssemblies_119600	F033507	CLDYGDGYGGVLLSPQYLTTFLSGFTLIVFMARSKVVGVATSTTSTEGTLTVNLSVTSGSGVIQQGSVYYLNPVLNGYYYCGLQMGNQSVQYDWTLNISATPTSLASGVTVFVEITYFDTLPNKPYYTETWAFTLNSNGQASGEFSVCMVPVTIFPESSVGIKVTSVKLASDQPISYTSSGITIIPED
BEDJCVIAssemblies_1105430079341	BEDJCVIAssemblies_121140	F084460	MSQINPDDLLQKIDEIVNKAIAKYLLKQASKYTPQEINVKFTKNWILVFLPNGYLKISRKFNEGSYKLKILQYKEKK
BEDJCVIAssemblies_1106445181589	BEDJCVIAssemblies_51210	F026309	NPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALMEAKRRGG
BEDJCVIAssemblies_1106445181923	BEDJCVIAssemblies_51870	F026309	MSLPAPLSNPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALLKAKRRTGG
BEDJCVIAssemblies_1106445183424	BEDJCVIAssemblies_22830	F026924	MSVGKVCRREHYRFEASKIVHLGWHSFHMPVIVYGHDPDPGKAQGDLCINVDGFYEPIGSFRENNLILSPMMGVKVEDVGESK
BEDJCVIAssemblies_1106445183693	BEDJCVIAssemblies_31800	F026309	MSLPAPLSNPNLFIGLVVFIVASILLYLERIPLSAWTTIVGVLLGYYFGYQHALLKERRTSE
BEDJCVIAssemblies_1106445183722	BEDJCVIAssemblies_32600	F027904	MEKYEPPEYDLFNLNNGGTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATASLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAVSSVANSANVFVKAYFVKGTGSPI
BEDJCVIAssemblies_1106445183722	BEDJCVIAssemblies_32620	F011233	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSTSTVPTSSSFVAEEVVSAKLPVKVT
BEDJCVIAssemblies_1106445183722	BEDJCVIAssemblies_32630	F006070	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGAFLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVEAIQSDFYTSAAERYLSLALTYSTAPSAGFVRAHIDLFYGGV