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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2009439003 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0055739 | Gp0050995 | Ga0026300 |
| Sample Name | 1_050719N |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 26884788 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bison Pool, Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.6 | Long. (o) | -110.9 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021443 | Metagenome / Metatranscriptome | 219 | Y |
| F043237 | Metagenome / Metatranscriptome | 156 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| bisonPool05dec07_BXBC24877_b1 | Not Available | 759 | Open in IMG/M |
| bisonPool05dec07_C5403 | Not Available | 1479 | Open in IMG/M |
| bisonPool05dec07_C574 | All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber | 4389 | Open in IMG/M |
| bisonPool05dec07_C6035 | Not Available | 1157 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| bisonPool05dec07_BXBC24877_b1 | BISONN_35593 | F021443 | YQNNGILSFAVMDLVFKIIKQQKRKSIILKKRKPIIHLLNYIDILNFNFKSNEFNIILSLKNNYKTQLTYNLYLHRSSYRRRYYEGFYKDSLKVIERENLCIIKLEDDFPAEIQPKNLNLATILMHILDKEEIDMINGNGIIFYCVFLM |
| bisonPool05dec07_C5403 | BISONN_18613 | F043237 | MDLEKTAKYIAQLSARGYKYAIIGQLSGYNRKLVKRLEYDGFVFYLCRLQTKKEVIAYCLERTDKPFKVYCLSSKPLEFPNAPLKLHYDEKTQRLRLLCQKSFISDCLNAIEKASEVKYPSPKLYIAQVNKALRQLYSVLAYTYNDRERVRAIRRKVKHWVVEALKRQYGLKPKDA |
| bisonPool05dec07_C574 | BISONN_1943 | F043237 | MELERTARYIAQLSSRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTGRLRLLAQRSFINECLRVIERASSLKYPNHKLYTIKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDVLRKKQRANSSTS |
| bisonPool05dec07_C6035 | BISONN_20752 | F043237 | QFPSRPLPKKIQEETMDLEKTAKYIAQLSRHGYRYAIIGKLVRYDREKVKRLEYDGFVFYLCRLPSKKEVIAYCLPRSEGLFRVYCLSSKPLEFPNAPLKLHYDEKTQRLRLLCQKSFINDCLNAIEKASEVKYPSPKLYIAQVNKVLRQLYEILAYTYNDRERVRAIKRKVKHWVVEALESQYGLKPKDAMIDYSRYVLKFSDVLKRKRQKATKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |