2007309001: Hot spring planktonic communities from Yellowstone Bath Hot Springs, Wyoming, USA

Overview

Basic Information

• IMG/M Taxon OID: 2007309001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051060 | Ga0027798
• Sample Name: Hot spring planktonic communities from Yellowstone Bath Hot Springs, Wyoming, USA
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20451936
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.560318
  • Long. (^o): -110.8338344
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F024322	Metagenome / Metatranscriptome	206	N
F054062	Metagenome / Metatranscriptome	140	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2007327490	Not Available	784
2007327491	Not Available	810
2007331210	Not Available	689

Sequences

Scaffold ID	Protein ID	Family	Sequence
2007327490	2007346216	F054062	VLRWKEFCDGLDKDPPEDIQKEAEHIFFDHVFPEVLLTFFQNASELLLLYEAALSAPAMKPIADAKFNELFRQSPIPFYESLVPVLKNLGAEPEKATFLEICAFLTTYKS
2007327491	2007346217	F024322	MSLLRKLRNARQWRYLRLVDPILQRYEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDISTYSFPFSAEERVGFYPPPVLMAHYNEFSQIAARLQHAFMVVVPDARFGKSEWGEVEFDAFFFAPAVDSEEFESQLDRIAGLRGSFVELWPKMVTFTEIIPKFSRRAEWGNGEKLVKGEWIAIRLTINLKDYELNAV
2007331210	2007350929	F013155	MELYQIIVVAIALANLAVTVWLLRLLLPVWRTLRKVVFVLDQYDFDRLAKQFLSNEKPVAETIDIKVSEKKEEGYKELTVTRVYKRPLNPKEIQEGFVRQMAERLQ