2001200004: Fossil microbial communities from Whale Fall, West Antarctic Peninsula - Bone

Overview

Basic Information

• IMG/M Taxon OID: 2001200004
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055718 | Gp0050981 | Ga0028837
• Sample Name: Fossil microbial communities from Whale Fall, West Antarctic Peninsula - Bone
• Sequencing Status: Finished
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30784116
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fossil Microbial Community From Whale Fall, Santa Cruz Basin Of The Pacific Ocean And West Antarctic Peninsula
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Fossil → Whale Fall → Fossil → Fossil Microbial Community From Whale Fall, Santa Cruz Basin Of The Pacific Ocean And West Antarctic Peninsula

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → fossil
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Santa Cruz Basin, Pacific Ocean
• Coordinates
  • Lat. (^o): -65.1
  • Long. (^o): -64.47
  • Alt. (m): N/A
  • Depth (m): 1670

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073087	Metagenome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2001413554	Not Available	859

Sequences

Scaffold ID	Protein ID	Family	Sequence
2001413554	2001511754	F073087	MNTQHQTSFTKAIIGSTQRLFRSNKNHSLLANSFINARTMKDIGVNPVGLN