Scaffold SRS014476_WUGC_scaffold_54611

Overview

Basic Information

• Taxon OID: 7000000721
• Scaffold ID: SRS014476_WUGC_scaffold_54611
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5707
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
SRS014476_WUGC_scaffold_54611__gene_64855	F022002	AGG	MFGLLLTLLLSLPSHAQDVRSKVPINRIISGFTLGVTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFAFDDLDVLEQIESELEDKYGMMIESEGTSKKKEKGIVDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELDRARSAEKESEI
SRS014476_WUGC_scaffold_54611__gene_64856	F022002	N/A	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFTFGDLKVFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDWAYSAENENEI
SRS014476_WUGC_scaffold_54611__gene_64857	F022002	N/A	MSRRLALTLGLLLALLLSLPSHAQDRRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI