NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS014476_WUGC_scaffold_33911

Scaffold SRS014476_WUGC_scaffold_33911


Overview

Basic Information
Taxon OID7000000721 Open in IMG/M
Scaffold IDSRS014476_WUGC_scaffold_33911 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5071
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097526Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
SRS014476_WUGC_scaffold_33911__gene_32039F097526GGAGGMQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKACRVGDPTPAEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELPVARDDAYGFAAALRDIPLTAPQINLLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAPLGSGDAEVQEIPQ

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