NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS019582_WUGC_scaffold_90271

Scaffold SRS019582_WUGC_scaffold_90271


Overview

Basic Information
Taxon OID7000000684 Open in IMG/M
Scaffold IDSRS019582_WUGC_scaffold_90271 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2, subject 763597684
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20951
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (37.84%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076653Metagenome118N
F078005Metagenome117N

Sequences

Protein IDFamilyRBSSequence
SRS019582_WUGC_scaffold_90271__gene_140760F078005N/AMKKNEFVKELERIIDMVKAEDDGFEYGGKVIFYKEYDDNYEISVKNIEMNLMVEANTMASMNDRTFACLMSEVYKQKFEL
SRS019582_WUGC_scaffold_90271__gene_140788F076653N/AMTRNRLMTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWCGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGEPFGANLACMVCDRKDIDWEALRLWLEKYDDPTDKSMVNSPIQFMYLYLYYTFNK

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