NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS077736_LANL_scaffold_38296

Scaffold SRS077736_LANL_scaffold_38296


Overview

Basic Information
Taxon OID7000000622 Open in IMG/M
Scaffold IDSRS077736_LANL_scaffold_38296 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13160
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064819Metagenome128N

Sequences

Protein IDFamilyRBSSequence
SRS077736_LANL_scaffold_38296__gene_58507F064819AGGMILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDVERYDLEKLTRNLKNLYECKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELKKI

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