Scaffold SRS077736_LANL_scaffold_15998

Overview

Basic Information

• Taxon OID: 7000000622
• Scaffold ID: SRS077736_LANL_scaffold_15998
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22535
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (69.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F103430	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
SRS077736_LANL_scaffold_15998__gene_19763	F076191	AGGA	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS077736_LANL_scaffold_15998__gene_19767	F103430	GAGG	MEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLGELKEVLDQEAIAYQIENKINLI