Scaffold SRS024580_LANL_scaffold_46227

Overview

Basic Information

• Taxon OID: 7000000402
• Scaffold ID: SRS024580_LANL_scaffold_46227
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159591683
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6342
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
SRS024580_LANL_scaffold_46227__gene_60410	F080166	N/A	VNILANFDNYNKVVEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR
SRS024580_LANL_scaffold_46227__gene_60411	F081455	AGGAG	METTNTENKNLFQQLARLGFDVNESLLELEKEYAPVEEIGMQNVDIIDAAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDVDHHLISSAKK