NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS024580_LANL_scaffold_26628

Scaffold SRS024580_LANL_scaffold_26628


Overview

Basic Information
Taxon OID7000000402 Open in IMG/M
Scaffold IDSRS024580_LANL_scaffold_26628 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 159591683
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2915
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078842Metagenome116N

Sequences

Protein IDFamilyRBSSequence
SRS024580_LANL_scaffold_26628__gene_30830F078842N/AMIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFTLSDIILSAKTYGDTCFMDAELYGPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFHTSYVRYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMINSIELDIYEVNS

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