Scaffold SRS047219_WUGC_scaffold_36275

Overview

Basic Information

• Taxon OID: 7000000351
• Scaffold ID: SRS047219_WUGC_scaffold_36275
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763536994
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23142
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
SRS047219_WUGC_scaffold_36275__gene_47867	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY
SRS047219_WUGC_scaffold_36275__gene_47872	F095629	AGGAG	MMRELIICVCLLGCFGIANANNVEQPKEVKIVHNDNSVALHKKIYQLEKRIERLEELLKKEGK
SRS047219_WUGC_scaffold_36275__gene_47887	F092232	GGAGG	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAASAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDARDPAAVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV