NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS021954_Baylor_scaffold_20607

Scaffold SRS021954_Baylor_scaffold_20607


Overview

Basic Information
Taxon OID7000000342 Open in IMG/M
Scaffold IDSRS021954_Baylor_scaffold_20607 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 158256496
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30545
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (84.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084362Metagenome112N
F103430Metagenome101N

Sequences

Protein IDFamilyRBSSequence
SRS021954_Baylor_scaffold_20607__gene_21396F103430GAGGMKQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMDTLNELKEVLDQEAIAYQIENDLQLI
SRS021954_Baylor_scaffold_20607__gene_21411F084362GGAGGMSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWW

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