NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C3252852

Scaffold C3252852


Overview

Basic Information
Taxon OID7000000320 Open in IMG/M
Scaffold IDC3252852 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2, subject 809635352
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097172Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
C3252852__gene_223573F097172N/AKKAATKKVTSAYKYHIDGYDKKGYPASYSKTSFYKDLNSLPAVKIGRTTINVPAVTSNVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPIKEGKKYTLEDLYPDEVGDYTTLYENNYLAGLRTILDNYKAEHPEYADVIEYDYNDYTSYVNSRSLDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK

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