NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS014689_WUGC_scaffold_13091

Scaffold SRS014689_WUGC_scaffold_13091


Overview

Basic Information
Taxon OID7000000318 Open in IMG/M
Scaffold IDSRS014689_WUGC_scaffold_13091 Open in IMG/M
Source Dataset NameHuman throat microbial communities from NIH, USA - visit 1, subject 763961826
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1574
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068942Metagenome124N

Sequences

Protein IDFamilyRBSSequence
SRS014689_WUGC_scaffold_13091__gene_13538F068942N/AMIRKILSLPTLALCFTLCTALFAGCGENNEGFVTKVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVSVTPPGTYFFNVRQPALPAKAQ

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