NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS013950_WUGC_scaffold_6523

Scaffold SRS013950_WUGC_scaffold_6523


Overview

Basic Information
Taxon OID7000000238 Open in IMG/M
Scaffold IDSRS013950_WUGC_scaffold_6523 Open in IMG/M
Source Dataset NameHuman subgingival plaque microbial communities from NIH, USA - visit 1, subject 763496533
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1385
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061925Metagenome131N

Sequences

Protein IDFamilyRBSSequence
SRS013950_WUGC_scaffold_6523__gene_5093F061925AGGAMSWEYSINLDSEESASSVVTDLKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKHDYHLTDCDTDEEVTLEHIFRSVI

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