NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS014578_WUGC_scaffold_72004

Scaffold SRS014578_WUGC_scaffold_72004


Overview

Basic Information
Taxon OID7000000226 Open in IMG/M
Scaffold IDSRS014578_WUGC_scaffold_72004 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11786
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081510Metagenome114N

Sequences

Protein IDFamilyRBSSequence
SRS014578_WUGC_scaffold_72004__gene_106226F081510AGGAGMKLPKLPNIQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSLYAGIKSGKKLEATKAKYEAKDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFCEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFDEEKQEYDLQYYVRWKTPRNLYATTSIKDFVPKKTRKELN

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