NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS014578_WUGC_scaffold_48118

Scaffold SRS014578_WUGC_scaffold_48118


Overview

Basic Information
Taxon OID7000000226 Open in IMG/M
Scaffold IDSRS014578_WUGC_scaffold_48118 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42713
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (86.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049707Metagenome146N
F095632Metagenome105N

Sequences

Protein IDFamilyRBSSequence
SRS014578_WUGC_scaffold_48118__gene_63112F049707AGGAGVVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYGETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKEN
SRS014578_WUGC_scaffold_48118__gene_63133F095632N/AMTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKKSQTN

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