Scaffold SRS024015_Baylor_scaffold

Basic Information
Taxon OID	7000000210 Open in IMG/M
Scaffold ID	SRS024015_Baylor_scaffold_51995 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

7000000210 Open in IMG/M

Scaffold ID

SRS024015_Baylor_scaffold_51995 Open in IMG/M

Source Dataset Name

Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11921
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

11921

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F095631	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
SRS024015_Baylor_scaffold_51995__gene_62117	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTREYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGISNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPINIIPTNTIPIEAIRRDFDNISDSNYILTAGNVIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLSNRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQEFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold SRS024015_Baylor_scaffold_51995

Overview

Ecosystem & Geography

Associated Families

Sequences