Scaffold SRS045715_LANL_scaffold_18620

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS045715_LANL_scaffold_18620

Scaffold SRS045715_LANL_scaffold_18620

Overview

Basic Information
Taxon OID	7000000144 Open in IMG/M
Scaffold ID	SRS045715_LANL_scaffold_18620 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	324468
Total Scaffold Genes	355 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	100 (28.17%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
SRS045715_LANL_scaffold_18620__gene_24239	F051210	N/A	MNNYSQIMGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMNVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGAFELPVTINTGTAAYSPLVGRKLIPGTVRVKVEDGTGKKFELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAISNPAGKITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQVALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINYRLISTLEKGYTGDVMNDLDLSNASTSLASKFQDYRSRVDLFDAYLINVETSLATRAVKGVTTTAYVAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIHEEQGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS045715_LANL_scaffold_18620__gene_24257	F071326	N/A	MAENMASRSVERSNKFYKATLKTIKAQLAMLGTKFIVLRPKENSKWKNVFGGSYSSDSTLENDYDEFTTTLIINQNEMKDVWNRNRDSVEAITNDGSLEVGDELQYTRDKRTYRFKITLKQGYSETGDTLFSYTLMSIIETLDM

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