Scaffold SRS050244_LANL_scaffold_8691

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS050244_LANL_scaffold_8691

Scaffold SRS050244_LANL_scaffold_8691

Overview

Basic Information
Taxon OID	7000000128 Open in IMG/M
Scaffold ID	SRS050244_LANL_scaffold_8691 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 675950834
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16171
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (22.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
SRS050244_LANL_scaffold_8691__gene_9585	F051210	N/A	MNNFSQIMGTPEMMSALRASSVSTEDARLRNNEYAKMFSRNAEMMDLFGMGKGSNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGTFELPITITPASGAYTPLVGRKLIPGTVRIKCDDGSGKKYELIDDGQGNFMSIAGVLKKGTINYLSGKIEFELNTPITAAGKITVVGKEDTTGTPCGTLGATNAHAADKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFRLVETLEKGYAGNAMTDLDLSNATTSLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYVAGNQAANQFQKGSVIGKFERNTKMTYINDLLGWYDGIPVLRSTDIKEAAGEGTFYTIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS050244_LANL_scaffold_8691__gene_9604	F071326	N/A	MAENMVLKSLDLSNKFYQAALSNIKAQLEILGTKFVVLRPKENSKWKNVFGGSYSSDSTLENDYDEFTTNLIVNLNDMKDVWNRNRDSIEAFTNDGSLEVGDELQYTRNKRTYRFKISLKQGYSETGDTLYSYTLMSIIETLDM

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