Scaffold SRS055378_LANL_scaffold

Basic Information
Taxon OID	7000000115 Open in IMG/M
Scaffold ID	SRS055378_LANL_scaffold_59127 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763860675
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

7000000115 Open in IMG/M

Scaffold ID

SRS055378_LANL_scaffold_59127 Open in IMG/M

Source Dataset Name

Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763860675

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11322
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11322

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F074985	Metagenome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
SRS055378_LANL_scaffold_59127__gene_67438	F051214	N/A	LYPINLGYRLFLEKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
SRS055378_LANL_scaffold_59127__gene_67439	F043991	GAG	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEVAQGDPSNVHPDFRA
SRS055378_LANL_scaffold_59127__gene_67442	F036281	AGGAG	MITLIKVDEGPVNIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSVREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWILENVEWAADTIRYF
SRS055378_LANL_scaffold_59127__gene_67443	F074985	AGGAGG	MELTDGGWYKAPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTYPQESILLKNIEEYEFIQYRPKQAWKVIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADVILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold SRS055378_LANL_scaffold_59127

Overview

Ecosystem & Geography

Associated Families

Sequences