NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS018145_Baylor_scaffold_50013

Scaffold SRS018145_Baylor_scaffold_50013


Overview

Basic Information
Taxon OID7000000085 Open in IMG/M
Scaffold IDSRS018145_Baylor_scaffold_50013 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 160158126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13619
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105378Metagenome100N

Sequences

Protein IDFamilyRBSSequence
SRS018145_Baylor_scaffold_50013__gene_77338F105378AGGMKVLVYVDEIKKWVQISSDEILDVTKNLSDLKDKDAAISNLGLYDKFISKEALESGFLPDVFTPDNIITDSKHQFATDEEKNNWNNKLNNPIPMQDKLVNNQIGYDSANSKFYIGINNQNVLLGGSSAFDNIKIVDGFFSGNSQPTVIRNNKFNSEGQLIMPLFVDVQCVEYTAGDLGEISISYTSDTIKIYNTGSFTGAFQCLIVYPLGSINE

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