Scaffold SRS042131_WUGC_scaffold_59238

Overview

Basic Information

• Taxon OID: 7000000029
• Scaffold ID: SRS042131_WUGC_scaffold_59238
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764487809
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29095
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F103430	Metagenome	101	N
F105376	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
SRS042131_WUGC_scaffold_59238__gene_101548	F105376	N/A	MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVKR
SRS042131_WUGC_scaffold_59238__gene_101568	F076191	AGGA	MKIIAENPAEEALLWRIKALSDEIVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENNHHYEKPMTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGFLRDAGN
SRS042131_WUGC_scaffold_59238__gene_101572	F103430	GAGG	MKLITIKAFIGSNNKTKKLEIDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLGELKEVLDQEAIAYQIENDLQLI