NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS024138_Baylor_scaffold_4308

Scaffold SRS024138_Baylor_scaffold_4308


Overview

Basic Information
Taxon OID7000000028 Open in IMG/M
Scaffold IDSRS024138_Baylor_scaffold_4308 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159207311
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2278
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099452Metagenome103N

Sequences

Protein IDFamilyRBSSequence
SRS024138_Baylor_scaffold_4308__gene_4756F099452AGGMDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSVNVFTLYKDIINLDDVSLLTELRHTEWYKDWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLKDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEVPDEYMSNQEVCLYMCLLNTDNLDFMDK

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