Scaffold SRS017139_Baylor_scaffold_86848

Overview

Basic Information

• Taxon OID: 7000000007
• Scaffold ID: SRS017139_Baylor_scaffold_86848
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44046
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
SRS017139_Baylor_scaffold_86848__gene_109294	F036281	AGGAG	MITLIKVDKGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWVMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAEREHGRWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF
SRS017139_Baylor_scaffold_86848__gene_109295	F027205	AGGA	VASRLIVSADDILKAVKKSEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHIEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS017139_Baylor_scaffold_86848__gene_109297	F043991	GAG	MSKKNPSVIDYFSINGDVIEEANEFDGISLEDWIDKRSSIKPSWTGQYSRQMHFDLPDDTEVSFYLTLNVVYADIIFADGVRTILFKCRQKKNLTRFISRVLEMANLGPKHVHPDFRA
SRS017139_Baylor_scaffold_86848__gene_109298	F051214	AGGAG	MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVISNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS017139_Baylor_scaffold_86848__gene_109299	F071329	AGGA	MLPVAKIIISGLTSIGAGMIASKFTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS017139_Baylor_scaffold_86848__gene_109307	F067847	AGGA	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVKEDPKYKELDDKLKETELNNL