Scaffold SRS022536_LANL_scaffold_40918

Overview

Basic Information

• Taxon OID: 7000000005
• Scaffold ID: SRS022536_LANL_scaffold_40918
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 809635352
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37444
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.93%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F077403	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
SRS022536_LANL_scaffold_40918__gene_95150	F077403	N/A	MKIIMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWRRERNPIDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLDARGAELRKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSELAYYLQGYLYYLMNPQQAHDWYQVTYLPDHAMHSVATEAVVTEGKLRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLFRDQEAPTSPQGSALPDHYEGYQLYQGQVRGDSIWIEM
SRS022536_LANL_scaffold_40918__gene_95172	F022002	N/A	XXXISGFTLGVTTPAQARAIIQRQGGKIISAEGTQAGSDDGFYAVTGLKYARRSTLTAGLYFYKGYLRKIAFLFDKLDVLELIESELENKYGMMAEGKETSKMKSKVIFDAFTSLEVVRRFEYEGHVGXXXXXXX