Scaffold Ga0325409_008100

Overview

Basic Information

• Taxon OID: 3300034901
• Scaffold ID: Ga0325409_008100
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10982
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018110	Metagenome	236	Y
F040184	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325409_008100_4972_5166	F040184	N/A	MQSYHLYVGQLESLSLSLFIYFLFFKHVYVQVVVIVAHVFPWFYVQERLKHPLWVGDKLPIQFS
Ga0325409_008100_9885_10016	F018110	AGG	MVITYVNNKSSSFHSTGVGYTKQLGYESAKYLLYQWLFNTNLD