Scaffold Ga0325407_049053

Overview

Basic Information

• Taxon OID: 3300034899
• Scaffold ID: Ga0325407_049053
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2601
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002024	Metagenome	603	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325407_049053_1351_1473	F002024	N/A	MEKIKHKLCNNRVKLIIIPTYSSTNSKVNSTLTINIQQIN
Ga0325407_049053_1534_1659	F002024	N/A	MKKIKHKSCNNRVKLTIIPKYSITNTKVNSTLKITIQKIIQ