Scaffold Ga0325407_025077

Overview

Basic Information

• Taxon OID: 3300034899
• Scaffold ID: Ga0325407_025077
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4970
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. Kb3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000201	Metagenome	1621	Y
F010588	Metagenome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325407_025077_2835_2954	F000201	N/A	MNIYHKLKVSYIIRHVIIKHALVKELLILLVQNDDIKPW
Ga0325407_025077_3658_3801	F010588	N/A	MLIASCLGYNHWSPYWVYIIHIITSLVKPFHFDIINLTKHNEEEKPK